Variant report

Variant	rs541774196
Chromosome Location	chr7:16170128-16170129
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16163332..16166682-chr7:16168579..16171460,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1846736	chr7:16168502-16173482	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1844385	chr7:16168502-16211553	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv511373	chr7:16168708-16182966	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv3475253	chr7:16169827-16176025	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16158200-16170400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:16167800-16170400	Weak transcription	Left Ventricle	heart
3	chr7:16168200-16170800	Enhancers	HSMM	muscle
4	chr7:16168400-16170200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:16168600-16170600	Enhancers	HMEC	breast
6	chr7:16168600-16171000	Enhancers	HUVEC	blood vessel
7	chr7:16168800-16170600	Enhancers	NHLF	lung
8	chr7:16168800-16170800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:16169000-16170200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:16169000-16170600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:16169200-16170200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:16169200-16170400	Weak transcription	Psoas Muscle	Psoas
13	chr7:16169400-16170400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:16169400-16170400	Enhancers	Hela-S3	cervix
15	chr7:16169600-16170400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:16169600-16170600	Enhancers	NH-A	brain
17	chr7:16169600-16171000	Enhancers	NHDF-Ad	bronchial
18	chr7:16169600-16171200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr7:16169800-16170200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:16169800-16170200	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:16169800-16170600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:16169800-16170800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:16169800-16170800	Enhancers	HSMMtube	muscle
24	chr7:16169800-16183800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:16170000-16170400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr7:16170000-16170400	Enhancers	Osteobl	bone
27	chr7:16170000-16170600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links