Variant report

Variant	rs541801781
Chromosome Location	chr4:79002692-79002693
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78980938..78982697-chr4:79002374..79004588,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv520625	chr4:79002655-79071788	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78981200-79016600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:78988800-79003000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:78992200-79006800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:78995800-79015800	Weak transcription	HepG2	liver
5	chr4:78997000-79004000	Weak transcription	Fetal Heart	heart
6	chr4:78997200-79005800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:78997400-79011200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:78997600-79011000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:78998400-79002800	Weak transcription	Pancreas	Pancrea
10	chr4:78998400-79006600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:78999600-79002800	Weak transcription	Aorta	Aorta
12	chr4:79000800-79002800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:79001400-79003000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:79001600-79014200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:79002000-79002800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:79002000-79003000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:79002200-79002800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:79002200-79003000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:79002200-79004000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:79002200-79013600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:79002400-79011600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:79002600-79002800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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