The 2.0 version of rSNPBase

Variant report

Variant rs541801791
Chromosome Location chr20:16369995-16369996
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16316000-16384400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr20:16334000-16377400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
3 chr20:16341200-16371600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr20:16342600-16377400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr20:16343600-16384600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr20:16344400-16380200 Weak transcription HSMMtube muscle
7 chr20:16344800-16371400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr20:16344800-16377400 Weak transcription Brain Angular Gyrus brain
9 chr20:16345000-16391200 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr20:16345400-16377400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr20:16345400-16391000 Weak transcription Brain Germinal Matrix brain
12 chr20:16346600-16393600 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr20:16347600-16392000 Weak transcription Fetal Kidney kidney
14 chr20:16348400-16383600 Weak transcription Small Intestine intestine
15 chr20:16349000-16371800 Weak transcription Stomach Mucosa stomach
16 chr20:16349200-16380000 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr20:16349600-16372200 Weak transcription Colonic Mucosa Colon
18 chr20:16349600-16376400 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr20:16349800-16381600 Weak transcription Muscle Satellite Cultured Cells --
20 chr20:16350000-16384000 Weak transcription HepG2 liver
21 chr20:16350000-16384200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr20:16350600-16375000 Weak transcription Colon Smooth Muscle Colon
23 chr20:16350800-16384200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr20:16353000-16384200 Weak transcription Primary T cells fromperipheralblood blood
25 chr20:16355000-16377400 Weak transcription Psoas Muscle Psoas
26 chr20:16355400-16380400 Weak transcription A549 lung
27 chr20:16355400-16385200 Weak transcription Brain Substantia Nigra brain
28 chr20:16355600-16377400 Weak transcription Brain Cingulate Gyrus brain
29 chr20:16356000-16384200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr20:16356200-16380000 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr20:16356800-16372000 Weak transcription NHEK skin
32 chr20:16357200-16383600 Weak transcription Brain Anterior Caudate brain
33 chr20:16357800-16385400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr20:16359800-16387800 Weak transcription Placenta Placenta
35 chr20:16360400-16377200 Weak transcription Fetal Lung lung
36 chr20:16360600-16371600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr20:16360600-16377600 Weak transcription Fetal Stomach stomach
38 chr20:16360600-16378400 Weak transcription Fetal Muscle Trunk muscle
39 chr20:16360600-16380200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr20:16360600-16382400 Weak transcription Primary T helper cells fromperipheralblood blood
41 chr20:16360600-16385200 Weak transcription Primary hematopoietic stem cells blood
42 chr20:16360800-16371600 Weak transcription Pancreas Pancrea
43 chr20:16360800-16376800 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr20:16360800-16380000 Weak transcription Brain Hippocampus Middle brain
45 chr20:16360800-16385000 Weak transcription Primary T helper cells PMA-I stimulated --
46 chr20:16360800-16385200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr20:16361000-16377800 Weak transcription Right Ventricle heart
48 chr20:16361000-16380400 Weak transcription Liver Liver
49 chr20:16361000-16381200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr20:16361600-16372200 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015