Variant report

Variant	rs541817827
Chromosome Location	chr1:153341540-153341541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000224784	Chromatin interaction
ENSG00000237008	Chromatin interaction
ENSG00000143546	Chromatin interaction
ENSG00000263841	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
2	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1002705	chr1:153307852-153525589	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
5	nsv947326	chr1:153340559-153352474	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153333600-153346200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:153338200-153343200	Weak transcription	HMEC	breast
3	chr1:153338200-153343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:153338400-153343200	Weak transcription	NHEK	skin
5	chr1:153338400-153343600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:153339600-153343000	Enhancers	Primary B cells from cord blood	blood
7	chr1:153339800-153342200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr1:153340000-153350400	Enhancers	Fetal Intestine Large	intestine
9	chr1:153340400-153344000	Enhancers	Fetal Intestine Small	intestine
10	chr1:153340400-153349000	Weak transcription	Spleen	Spleen
11	chr1:153340600-153341600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr1:153340800-153342200	Weak transcription	Esophagus	oesophagus
13	chr1:153340800-153343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:153341400-153342000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr1:153341400-153347800	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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