Variant report

Variant	rs541821274
Chromosome Location	chr7:116888622-116888623
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv516761	chr7:116888161-116892846	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116887400-116889200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:116887600-116889200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:116888000-116890200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:116888000-116892400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:116888200-116889400	Weak transcription	GM12878-XiMat	blood
6	chr7:116888600-116888800	Enhancers	Brain Anterior Caudate	brain
7	chr7:116888600-116888800	Enhancers	Brain Hippocampus Middle	brain
8	chr7:116888600-116888800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:116888600-116889200	Enhancers	Brain Substantia Nigra	brain
10	chr7:116888600-116889600	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:116888600-116889800	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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