The 2.0 version of rSNPBase

Variant report

Variant rs541839942
Chromosome Location chr17:66484399-66484400
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:66467800-66487000 Weak transcription Right Atrium heart
2 chr17:66478400-66487600 Weak transcription Gastric stomach
3 chr17:66480800-66490600 Enhancers Primary monocytes fromperipheralblood blood
4 chr17:66481400-66486000 Weak transcription Adipose Nuclei Adipose
5 chr17:66481400-66488200 Weak transcription Brain Hippocampus Middle brain
6 chr17:66481600-66487000 Weak transcription Brain Substantia Nigra brain
7 chr17:66481800-66486200 Weak transcription Primary neutrophils fromperipheralblood blood
8 chr17:66482000-66487000 Weak transcription Placenta Placenta
9 chr17:66482400-66484600 Enhancers HepG2 liver
10 chr17:66482400-66486200 Weak transcription Left Ventricle heart
11 chr17:66482400-66486400 Weak transcription Fetal Adrenal Gland Adrenal Gland
12 chr17:66482400-66486400 Enhancers Monocytes-CD14+_RO01746 blood
13 chr17:66482400-66487000 Weak transcription Ovary ovary
14 chr17:66482600-66487800 Weak transcription Liver Liver
15 chr17:66482800-66484600 Enhancers Primary T helper naive cells fromperipheralblood blood
16 chr17:66482800-66485000 Enhancers Primary T killer naive cells fromperipheralblood blood
17 chr17:66483000-66484600 Enhancers Primary B cells from cord blood blood
18 chr17:66483000-66487000 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr17:66483400-66484600 Enhancers Primary T killer memory cells from peripheral blood blood
20 chr17:66483400-66485000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
21 chr17:66483400-66485200 Enhancers Dnd41 blood
22 chr17:66483600-66484600 Enhancers Primary hematopoietic stem cells short term culture blood
23 chr17:66483600-66484600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr17:66483600-66484600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr17:66483600-66484800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
26 chr17:66483600-66484800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
27 chr17:66483600-66485000 Enhancers Primary B cells from peripheral blood blood
28 chr17:66483600-66485000 Enhancers Primary T helper cells PMA-I stimulated --
29 chr17:66483600-66485000 Enhancers Primary Natural Killer cells fromperipheralblood blood
30 chr17:66483600-66485000 Enhancers Fetal Thymus thymus
31 chr17:66483600-66486400 Weak transcription Spleen Spleen
32 chr17:66483800-66485000 Enhancers Primary T cells fromperipheralblood blood
33 chr17:66484000-66484400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
34 chr17:66484000-66484600 Flanking Active TSS GM12878-XiMat blood
35 chr17:66484000-66484800 Enhancers Primary hematopoietic stem cells blood
36 chr17:66484200-66484400 ZNF genes & repeats Esophagus oesophagus
37 chr17:66484200-66484600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr17:66484200-66484600 Flanking Active TSS Primary T cells from cord blood blood
39 chr17:66484200-66484600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
40 chr17:66484200-66484600 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
41 chr17:66484200-66484600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
42 chr17:66484200-66484600 Enhancers Primary mononuclear cells fromperipheralblood Blood
43 chr17:66484200-66484600 Enhancers Rectal Mucosa Donor 29 rectum
44 chr17:66484200-66484800 Enhancers Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015