Variant report

Variant	rs541841787
Chromosome Location	chr2:113189623-113189624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422414	chr2:112883450-113200285	Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949573	chr2:112986955-113320975	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv874871	chr2:113021811-113217630	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv1801285	chr2:113113618-113200081	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv3371480	chr2:113189306-113191854	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113188800-113189800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:113188800-113190000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr2:113188800-113190000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr2:113188800-113190000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr2:113189000-113189800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr2:113189000-113189800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:113189000-113190000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr2:113189000-113190400	Active TSS	Brain Angular Gyrus	brain
9	chr2:113189000-113191200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:113189000-113191200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:113189000-113191200	Active TSS	Liver	Liver
12	chr2:113189200-113190000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr2:113189200-113190200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr2:113189200-113191200	Active TSS	Osteobl	bone
15	chr2:113189400-113189800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr2:113189400-113189800	Enhancers	Fetal Brain Female	brain
17	chr2:113189400-113190600	Enhancers	Primary B cells from cord blood	blood
18	chr2:113189400-113191200	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr2:113189400-113191200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:113189400-113191200	Active TSS	Colonic Mucosa	Colon
21	chr2:113189400-113191200	Active TSS	Hela-S3	cervix
22	chr2:113189400-113191200	Active TSS	HSMM	muscle
23	chr2:113189400-113191400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:113189600-113189800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr2:113189600-113189800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:113189600-113189800	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr2:113189600-113189800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr2:113189600-113189800	Enhancers	Brain Substantia Nigra	brain
29	chr2:113189600-113189800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr2:113189600-113189800	Enhancers	A549	lung
31	chr2:113189600-113189800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr2:113189600-113190000	Enhancers	Primary T cells from cord blood	blood
33	chr2:113189600-113190400	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr2:113189600-113190400	Active TSS	NHDF-Ad	bronchial
35	chr2:113189600-113191000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:113189600-113191200	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr2:113189600-113191200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:113189600-113191200	Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr2:113189600-113191200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr2:113189600-113191200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr2:113189600-113191200	Active TSS	Muscle Satellite Cultured Cells	--
42	chr2:113189600-113191200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr2:113189600-113191200	Active TSS	Brain Cingulate Gyrus	brain
44	chr2:113189600-113191200	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr2:113189600-113191200	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr2:113189600-113191200	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr2:113189600-113191200	Active TSS	Stomach Smooth Muscle	stomach
48	chr2:113189600-113191200	Active TSS	GM12878-XiMat	blood
49	chr2:113189600-113191200	Active TSS	HMEC	breast
50	chr2:113189600-113191200	Active TSS	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links