Variant report
| Variant | rs541874727 |
|---|---|
| Chromosome Location | chr6:28023353-28023354 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28023183..28024935-chr6:43739349..43741266,2 | K562 | blood: | |
| 2 | chr6:28022204..28024125-chr6:28233468..28235109,2 | MCF-7 | breast: | |
| 3 | chr6:27856950..27859637-chr6:28022500..28024631,2 | K562 | blood: | |
| 4 | chr6:28022742..28025114-chr6:28059303..28061030,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR2B8P | TF binding region |
| ENSG00000197153 | Chromatin interaction |
| ENSG00000112715 | Chromatin interaction |
| ENSG00000219891 | Chromatin interaction |
| ENSG00000197062 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830619 | chr6:27872302-28062544 | Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv883513 | chr6:27982152-28033087 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv981052 | chr6:27987196-28024382 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv966688 | chr6:28019147-28028399 | Bivalent Enhancer | TF binding regionChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 5 | esv3390093 | chr6:28022023-28024221 | Inactive region | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 6 | esv3436863 | chr6:28022773-28024221 | Inactive region | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
