Variant report

Variant	rs541882698
Chromosome Location	chr3:42953076-42953077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42946486..42948443-chr3:42951858..42953439,2	K562	blood:

Variant related genes	Relation type
ENSG00000182983	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3339861	chr3:42952973-42955196	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42948400-42954600	Weak transcription	NH-A	brain
2	chr3:42948600-42954200	Weak transcription	Small Intestine	intestine
3	chr3:42948600-42955200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr3:42948600-42955600	Weak transcription	NHDF-Ad	bronchial
5	chr3:42948800-42954600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:42948800-42954600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:42949000-42954400	Weak transcription	Stomach Mucosa	stomach
8	chr3:42949000-42954600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:42949200-42955000	Weak transcription	Brain Substantia Nigra	brain
10	chr3:42949600-42953400	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr3:42949600-42953400	Strong transcription	Stomach Smooth Muscle	stomach
12	chr3:42949600-42953600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:42949600-42954000	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:42949800-42953600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:42949800-42957000	ZNF genes & repeats	Ovary	ovary
16	chr3:42950000-42953400	Strong transcription	Brain Hippocampus Middle	brain
17	chr3:42950000-42953600	ZNF genes & repeats	Fetal Brain Female	brain
18	chr3:42950000-42954000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:42950400-42954400	Weak transcription	Thymus	Thymus
20	chr3:42950800-42953600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
21	chr3:42950800-42954400	Weak transcription	Colonic Mucosa	Colon
22	chr3:42951000-42953200	ZNF genes & repeats	Spleen	Spleen
23	chr3:42951200-42953400	Strong transcription	Right Ventricle	heart
24	chr3:42951200-42954600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:42951400-42953400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:42951400-42953400	Strong transcription	Brain Anterior Caudate	brain
27	chr3:42951400-42953400	Strong transcription	Placenta	Placenta
28	chr3:42951400-42953600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr3:42951400-42953600	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr3:42951600-42953400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
31	chr3:42951600-42953600	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr3:42951600-42954400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:42951800-42953400	Strong transcription	Left Ventricle	heart
34	chr3:42951800-42953600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:42951800-42953600	ZNF genes & repeats	Colon Smooth Muscle	Colon
36	chr3:42951800-42953600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
37	chr3:42951800-42953800	ZNF genes & repeats	Fetal Kidney	kidney
38	chr3:42951800-42954200	Weak transcription	Fetal Thymus	thymus
39	chr3:42951800-42959000	ZNF genes & repeats	Fetal Lung	lung
40	chr3:42952000-42953400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:42952000-42953400	Strong transcription	Duodenum Mucosa	Duodenum
42	chr3:42952000-42953600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:42952000-42953600	ZNF genes & repeats	Adipose Nuclei	Adipose
44	chr3:42952000-42953600	Strong transcription	Brain Angular Gyrus	brain
45	chr3:42952000-42953600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:42952000-42953600	Strong transcription	Fetal Heart	heart
47	chr3:42952000-42953600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
48	chr3:42952000-42953600	Strong transcription	Fetal Stomach	stomach
49	chr3:42952000-42953600	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr3:42952000-42953800	Strong transcription	Fetal Intestine Large	intestine

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