Variant report

Variant	rs541885662
Chromosome Location	chr6:165115066-165115067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:165110029..165112755-chr6:165114733..165117071,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1017076	chr6:164945167-165195092	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830861	chr6:165014475-165231204	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv525815	chr6:165017873-165262895	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv605234	chr6:165054409-165130872	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv605235	chr6:165115007-165214015	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165111200-165117600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:165112200-165117200	Enhancers	Brain Germinal Matrix	brain
3	chr6:165112600-165115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:165113200-165116400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:165113200-165117800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:165113200-165118000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:165113400-165115200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:165113400-165117600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:165113600-165116800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:165113800-165116800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:165113800-165117200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:165113800-165117400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:165113800-165117800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:165114000-165116600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:165114200-165115600	Weak transcription	Brain Anterior Caudate	brain
16	chr6:165114400-165117200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:165114600-165115600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:165114800-165115200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:165114800-165115200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:165114800-165115200	Active TSS	Brain Hippocampus Middle	brain
21	chr6:165114800-165115200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr6:165114800-165115400	Active TSS	Brain Angular Gyrus	brain
23	chr6:165114800-165115800	Enhancers	Fetal Brain Male	brain
24	chr6:165114800-165116000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:165114800-165116000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:165115000-165115200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:165115000-165115200	Active TSS	Brain Substantia Nigra	brain
28	chr6:165115000-165115600	Active TSS	Brain Cingulate Gyrus	brain
29	chr6:165115000-165115800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:165115000-165115800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:165115000-165115800	Enhancers	Fetal Muscle Leg	muscle
32	chr6:165115000-165116000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr6:165115000-165116200	Enhancers	Fetal Brain Female	brain
34	chr6:165115000-165116400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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