Variant report

Variant	rs541887858
Chromosome Location	chr9:26723780-26723781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26723206..26723920-chr9:26975181..26975897,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv892858	chr9:26609613-26783463	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv892860	chr9:26704385-26789940	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892861	chr9:26707333-26789940	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv466332	chr9:26709294-26783463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv613941	chr9:26709294-26783463	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv613942	chr9:26722736-26789975	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26720600-26726600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:26722200-26723800	Enhancers	Duodenum Mucosa	Duodenum
3	chr9:26723000-26723800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
4	chr9:26723000-26723800	Active TSS	Fetal Brain Female	brain
5	chr9:26723000-26724000	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr9:26723200-26723800	Active TSS	Brain Anterior Caudate	brain
7	chr9:26723200-26723800	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr9:26723400-26723800	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr9:26723400-26723800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr9:26723400-26723800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:26723400-26723800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:26723400-26723800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr9:26723400-26723800	Active TSS	Brain Germinal Matrix	brain
14	chr9:26723400-26723800	Flanking Bivalent TSS/Enh	A549	lung
15	chr9:26723400-26724000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:26723400-26724000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:26723600-26723800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:26723600-26723800	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr9:26723600-26723800	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:26723600-26723800	Enhancers	Colon Smooth Muscle	Colon
21	chr9:26723600-26724000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:26723600-26724000	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr9:26723600-26724000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr9:26723600-26724000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:26723600-26724000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:26723600-26724000	Enhancers	Small Intestine	intestine

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