Variant report

Variant	rs541898127
Chromosome Location	chr2:10713532-10713533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10711662..10714609-chr2:10716774..10718684,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007185	chr2:10540386-10791743	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv833370	chr2:10625149-10785402	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1009897	chr2:10627248-10751468	Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv828341	chr2:10712906-10713808	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10698600-10736600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:10699400-10716200	Weak transcription	Fetal Brain Male	brain
3	chr2:10702000-10715800	Weak transcription	Hela-S3	cervix
4	chr2:10702000-10717400	Weak transcription	Psoas Muscle	Psoas
5	chr2:10702200-10713800	Weak transcription	K562	blood
6	chr2:10705800-10736000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr2:10706000-10713800	Weak transcription	HSMMtube	muscle
8	chr2:10706400-10713800	Weak transcription	Brain Substantia Nigra	brain
9	chr2:10706400-10716000	Weak transcription	Fetal Kidney	kidney
10	chr2:10706400-10716600	Strong transcription	Fetal Intestine Small	intestine
11	chr2:10707400-10728800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:10708600-10718600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:10708600-10718800	Strong transcription	Primary T cells from cord blood	blood
14	chr2:10708600-10719600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr2:10708600-10720000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:10708600-10727000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:10708600-10732000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr2:10708800-10716000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:10708800-10718400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:10708800-10720600	Strong transcription	Fetal Intestine Large	intestine
21	chr2:10708800-10732800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:10709000-10718200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr2:10709000-10718600	Strong transcription	Dnd41	blood
24	chr2:10709000-10719000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr2:10709000-10719000	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr2:10709000-10719200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr2:10709000-10725800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr2:10709000-10726600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr2:10709200-10714000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:10709200-10715600	Strong transcription	HSMM	muscle
31	chr2:10709200-10718600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr2:10709200-10718600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr2:10709200-10719200	Strong transcription	Liver	Liver
34	chr2:10709200-10719800	Strong transcription	HepG2	liver
35	chr2:10709200-10746800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:10709400-10713800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr2:10709400-10714200	Strong transcription	NHEK	skin
38	chr2:10709400-10716200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr2:10709400-10716600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr2:10709400-10732600	Strong transcription	Primary B cells from cord blood	blood
41	chr2:10709600-10718800	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr2:10709800-10715800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:10709800-10719000	Strong transcription	Placenta	Placenta
44	chr2:10709800-10719600	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr2:10710000-10716800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:10710000-10717800	Strong transcription	Fetal Muscle Trunk	muscle
47	chr2:10710200-10713800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr2:10710200-10715800	Weak transcription	NHLF	lung
49	chr2:10710200-10716400	Strong transcription	A549	lung
50	chr2:10710400-10718400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links