Variant report

Variant	rs541905697
Chromosome Location	chr8:67687966-67687967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:67623840..67628206-chr8:67684536..67689963,10	MCF-7	breast:
2	chr8:67687366..67688870-chr8:67714479..67716823,2	MCF-7	breast:
3	chr8:67679426..67682850-chr8:67685212..67688509,3	MCF-7	breast:
4	chr8:67624145..67628067-chr8:67684003..67690579,11	MCF-7	breast:
5	chr14:20922332..20925092-chr8:67686115..67688747,2	MCF-7	breast:
6	chr19:10764662..10765449-chr8:67687390..67687995,2	Hela-S3	cervix:
7	chr8:67679605..67685169-chr8:67685347..67688416,6	MCF-7	breast:
8	chr8:67686161..67689126-chr8:67837035..67839189,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000092094	Chromatin interaction
ENSG00000213005	Chromatin interaction
ENSG00000104205	Chromatin interaction
ENSG00000129351	Chromatin interaction
ENSG00000245910	Chromatin interaction
ENSG00000100823	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3405382	chr8:67686223-67688771	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	esv2062022	chr8:67687913-67688322	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67686400-67688000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:67686400-67688000	Active TSS	Brain Germinal Matrix	brain
3	chr8:67686400-67688000	Active TSS	Osteobl	bone
4	chr8:67686400-67688200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:67686400-67688400	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr8:67686400-67688400	Active TSS	Colonic Mucosa	Colon
7	chr8:67686400-67688400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr8:67686400-67688400	Active TSS	Right Atrium	heart
9	chr8:67686400-67688600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr8:67686400-67688600	Active TSS	Stomach Smooth Muscle	stomach
11	chr8:67686400-67688800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr8:67686400-67689200	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr8:67686600-67688000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:67686600-67688000	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr8:67686600-67688000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
16	chr8:67686600-67688000	Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr8:67686600-67688000	Active TSS	Duodenum Mucosa	Duodenum
18	chr8:67686600-67688000	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr8:67686600-67688000	Active TSS	Fetal Kidney	kidney
20	chr8:67686600-67688000	Active TSS	HSMM	muscle
21	chr8:67686600-67688000	Active TSS	NHDF-Ad	bronchial
22	chr8:67686600-67688200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr8:67686600-67688200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr8:67686600-67688200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:67686600-67688200	Active TSS	Fetal Heart	heart
26	chr8:67686600-67688200	Active TSS	Gastric	stomach
27	chr8:67686600-67688200	Active TSS	Left Ventricle	heart
28	chr8:67686600-67688200	Active TSS	Right Ventricle	heart
29	chr8:67686600-67688200	Active TSS	NHLF	lung
30	chr8:67686600-67688400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:67686600-67688400	Active TSS	Muscle Satellite Cultured Cells	--
32	chr8:67686600-67688400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:67686600-67688400	Active TSS	Aorta	Aorta
34	chr8:67686600-67688400	Active TSS	Brain Anterior Caudate	brain
35	chr8:67686600-67688400	Active TSS	Brain Hippocampus Middle	brain
36	chr8:67686600-67688400	Active TSS	Ovary	ovary
37	chr8:67686600-67688600	Active TSS	H9 Cell Line	embryonic stem cell
38	chr8:67686600-67688600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr8:67686600-67688600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:67686600-67688600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr8:67686600-67688600	Active TSS	Psoas Muscle	Psoas
42	chr8:67686600-67688600	Active TSS	Rectal Smooth Muscle	rectum
43	chr8:67686800-67688000	Active TSS	Fetal Intestine Small	intestine
44	chr8:67686800-67688000	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr8:67686800-67688000	Active TSS	Thymus	Thymus
46	chr8:67686800-67688000	Active TSS	A549	lung
47	chr8:67686800-67688000	Active TSS	HepG2	liver
48	chr8:67686800-67688000	Active TSS	HUVEC	blood vessel
49	chr8:67686800-67688200	Active TSS	H1 Cell Line	embryonic stem cell
50	chr8:67686800-67688200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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