Variant report

Variant	rs541919570
Chromosome Location	chr3:86842267-86842268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv877125	chr3:86794501-86916882	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv877126	chr3:86794501-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv877127	chr3:86832039-86952516	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1008177	chr3:86841615-86905761	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86832000-86842400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:86836600-86864400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:86840600-86842400	Weak transcription	Hela-S3	cervix
4	chr3:86840600-86842600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:86840600-86842600	Weak transcription	Fetal Lung	lung
6	chr3:86840600-86842800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:86841400-86843400	Enhancers	HSMM	muscle
8	chr3:86841600-86842600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:86841600-86842800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:86841600-86843400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:86841600-86843400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:86841600-86843400	Enhancers	NH-A	brain
13	chr3:86841600-86843400	Enhancers	NHDF-Ad	bronchial
14	chr3:86841600-86843400	Enhancers	NHLF	lung
15	chr3:86841600-86843400	Enhancers	Osteobl	bone
16	chr3:86841800-86842400	Weak transcription	Brain Substantia Nigra	brain
17	chr3:86841800-86842400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:86841800-86842600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:86841800-86842600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:86841800-86842600	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:86841800-86842800	Weak transcription	Fetal Muscle Leg	muscle
22	chr3:86841800-86843200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:86842200-86842800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:86842200-86842800	Enhancers	A549	lung
25	chr3:86842200-86842800	Enhancers	HSMMtube	muscle

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