Variant report

Variant	rs541922958
Chromosome Location	chr5:112161574-112161575
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112159983..112161663-chr5:112163922..112165564,2	K562	blood:
2	chr5:112154161..112155749-chr5:112161168..112163115,2	K562	blood:

Variant related genes	Relation type
ENSG00000134982	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032464	chr5:112076061-112192380	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv537862	chr5:112076061-112192380	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv33290	chr5:112110808-112238295	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv1034239	chr5:112161239-112194693	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112093400-112183800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:112103000-112173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:112118200-112177000	Weak transcription	Colonic Mucosa	Colon
4	chr5:112129400-112163800	Weak transcription	Small Intestine	intestine
5	chr5:112129600-112163600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:112131800-112164000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:112132000-112174000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:112132800-112179800	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:112134000-112162800	Weak transcription	Colon Smooth Muscle	Colon
10	chr5:112136600-112176200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr5:112140400-112183800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:112141400-112162400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:112145400-112165600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:112146200-112165800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:112149000-112163600	Weak transcription	A549	lung
16	chr5:112149400-112176400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr5:112149800-112166400	Strong transcription	Fetal Thymus	thymus
18	chr5:112150200-112162000	Strong transcription	Fetal Muscle Trunk	muscle
19	chr5:112150200-112177800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:112150400-112166600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:112151400-112176400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr5:112152000-112164200	Weak transcription	HMEC	breast
23	chr5:112152000-112170400	Weak transcription	Brain Angular Gyrus	brain
24	chr5:112152000-112183800	Weak transcription	Gastric	stomach
25	chr5:112152200-112163600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr5:112152200-112172000	Weak transcription	NHLF	lung
27	chr5:112153200-112169600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr5:112153200-112179400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:112153200-112179800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:112153400-112161800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:112153400-112165800	Strong transcription	Liver	Liver
32	chr5:112154000-112175200	Weak transcription	Stomach Mucosa	stomach
33	chr5:112154400-112179400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:112154600-112177800	Strong transcription	Primary T cells from cord blood	blood
35	chr5:112154800-112165600	Strong transcription	Osteobl	bone
36	chr5:112155000-112183800	Weak transcription	Aorta	Aorta
37	chr5:112155200-112173600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr5:112155800-112162800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:112155800-112163200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr5:112155800-112163600	Weak transcription	Psoas Muscle	Psoas
41	chr5:112155800-112163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr5:112155800-112173400	Weak transcription	Pancreas	Pancrea
43	chr5:112155800-112173800	Weak transcription	Hela-S3	cervix
44	chr5:112156000-112162800	Weak transcription	HepG2	liver
45	chr5:112156000-112162800	Weak transcription	NH-A	brain
46	chr5:112156000-112163800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr5:112156000-112163800	Weak transcription	NHEK	skin
48	chr5:112156000-112173400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr5:112156000-112173400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr5:112156000-112173400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links