Variant report

Variant	rs541925706
Chromosome Location	chr10:6213978-6213979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6213667..6215175-chr10:6232475..6234152,2	MCF-7	breast:
2	chr10:6212333..6214108-chr10:6443084..6445414,2	MCF-7	breast:
3	chr10:6213323..6215618-chr13:111812955..111815172,2	MCF-7	breast:
4	chr10:6213961..6227951-chr10:6240689..6247831,28	MCF-7	breast:
5	chr10:6213842..6217578-chr10:6440215..6444300,4	MCF-7	breast:
6	chr10:6209809..6221866-chr10:6241112..6247882,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
7	nsv894818	chr10:6210740-6222819	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv894819	chr10:6210740-6226889	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv894820	chr10:6210740-6226889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv894821	chr10:6210740-6228226	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv894822	chr10:6210740-6228226	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv466725	chr10:6213807-6228226	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv549910	chr10:6213807-6228226	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv894823	chr10:6213960-6228226	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6188400-6225200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:6206600-6220000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:6207000-6214000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:6207000-6214800	Weak transcription	Colonic Mucosa	Colon
5	chr10:6207000-6218600	Weak transcription	Fetal Lung	lung
6	chr10:6207000-6219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:6207000-6219400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:6207000-6244400	Weak transcription	Hela-S3	cervix
9	chr10:6207200-6214200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:6207200-6217800	Weak transcription	HMEC	breast
11	chr10:6207200-6218800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:6207600-6214200	Weak transcription	Brain Germinal Matrix	brain
13	chr10:6207600-6214600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:6207600-6214800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:6207600-6218600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:6209000-6216400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:6209200-6214000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:6209400-6214000	Weak transcription	Right Atrium	heart
19	chr10:6209400-6214000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:6209400-6218200	Weak transcription	Fetal Brain Female	brain
21	chr10:6209400-6224400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:6209800-6217600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:6210000-6215000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr10:6210000-6215800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:6210200-6214000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:6210200-6220800	Enhancers	Left Ventricle	heart
27	chr10:6210400-6214000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:6210600-6216800	Enhancers	Primary T cells fromperipheralblood	blood
29	chr10:6210600-6217800	Weak transcription	NHEK	skin
30	chr10:6210800-6214200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:6210800-6214200	Weak transcription	Gastric	stomach
32	chr10:6210800-6214600	Weak transcription	Esophagus	oesophagus
33	chr10:6210800-6215000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr10:6210800-6217800	Weak transcription	K562	blood
35	chr10:6211000-6214000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:6211000-6214000	Weak transcription	Primary B cells from cord blood	blood
37	chr10:6211000-6221800	Enhancers	Adipose Nuclei	Adipose
38	chr10:6211200-6214000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:6211200-6214000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:6211200-6215600	Enhancers	Duodenum Mucosa	Duodenum
41	chr10:6211200-6218000	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr10:6211200-6221600	Enhancers	Psoas Muscle	Psoas
43	chr10:6211400-6214000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:6211400-6214000	Enhancers	Fetal Muscle Leg	muscle
45	chr10:6211400-6214000	Enhancers	Stomach Smooth Muscle	stomach
46	chr10:6211400-6214400	Enhancers	NHLF	lung
47	chr10:6211600-6215200	Weak transcription	Aorta	Aorta
48	chr10:6211800-6214000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:6211800-6214600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:6212200-6214200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links