Variant report

Variant	rs541928822
Chromosome Location	chr9:96373096-96373097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96340603..96342904-chr9:96370807..96373306,2	K562	blood:
2	chr9:96365988..96367962-chr9:96372230..96374229,2	MCF-7	breast:
3	chr9:96338802..96340670-chr9:96371503..96373772,3	MCF-7	breast:
4	chr9:96371713..96374026-chr9:96382749..96385685,2	K562	blood:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1055035	chr9:96372269-96402747	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96352400-96384600	Weak transcription	NHLF	lung
2	chr9:96361400-96380400	Weak transcription	Fetal Brain Male	brain
3	chr9:96361600-96379400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:96363200-96374200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:96363200-96374600	Weak transcription	Gastric	stomach
6	chr9:96363200-96392000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:96363600-96383600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:96363800-96374000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:96363800-96374400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:96364200-96380600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:96366000-96374600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:96366200-96375000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:96366400-96379400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:96366600-96373200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:96366600-96386600	Weak transcription	Fetal Heart	heart
16	chr9:96372200-96373800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr9:96372600-96374600	Weak transcription	Dnd41	blood
18	chr9:96372800-96373200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr9:96372800-96373400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
20	chr9:96372800-96373400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:96372800-96373400	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr9:96372800-96374400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:96372800-96376000	Weak transcription	Right Ventricle	heart
24	chr9:96372800-96392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:96373000-96373400	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr9:96373000-96373400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:96373000-96373400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:96373000-96373400	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr9:96373000-96377200	Enhancers	Psoas Muscle	Psoas
30	chr9:96373000-96379400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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