Variant report

Variant	rs541931987
Chromosome Location	chr8:86374370-86374371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:86363678..86364494-chr8:86374198..86374980,2	MCF-7	breast:
2	chr8:86373793..86376899-chr8:86998896..87001584,3	MCF-7	breast:
3	chr22:36782277..36784307-chr8:86374266..86376495,2	MCF-7	breast:
4	chr8:86211076..86211587-chr8:86373603..86374373,2	MCF-7	breast:
5	chr8:86372229..86378702-chr8:86846475..86858080,32	MCF-7	breast:
6	chr8:86372586..86374669-chr8:86379787..86381546,2	MCF-7	breast:
7	chr8:86373353..86377706-chr8:86848632..86856784,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253154	Chromatin interaction
ENSG00000100345	Chromatin interaction
ENSG00000147614	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022463	chr8:86257031-86547831	Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv1804888	chr8:86263098-86986703	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv831377	chr8:86263107-86444141	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1028148	chr8:86310570-86553130	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2761206	chr8:86310582-86468868	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv3361413	chr8:86374200-86377398	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86354400-86375400	Weak transcription	Psoas Muscle	Psoas
2	chr8:86358400-86375600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:86366600-86375000	Weak transcription	HMEC	breast
4	chr8:86366600-86375200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:86366800-86375200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:86366800-86375200	Weak transcription	NHEK	skin
7	chr8:86367600-86375600	Weak transcription	Gastric	stomach
8	chr8:86368400-86375400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:86368600-86375600	Weak transcription	Esophagus	oesophagus
10	chr8:86369200-86375400	Enhancers	Primary B cells from cord blood	blood
11	chr8:86370400-86375400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:86371800-86375200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:86371800-86375200	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:86372000-86375400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:86372200-86375200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:86372200-86375200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr8:86372200-86375400	Weak transcription	Primary T cells from cord blood	blood
18	chr8:86372200-86375400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:86372400-86374800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:86372400-86375200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:86372600-86374600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:86373000-86374400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr8:86373400-86374800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr8:86373600-86374400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr8:86373600-86374600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:86373600-86374600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr8:86373600-86374800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr8:86373800-86374400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr8:86373800-86375200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr8:86373800-86375200	Enhancers	Brain Angular Gyrus	brain
31	chr8:86373800-86375200	Enhancers	Brain Anterior Caudate	brain
32	chr8:86373800-86375200	Enhancers	Brain Hippocampus Middle	brain
33	chr8:86373800-86375400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:86373800-86375400	Enhancers	Fetal Lung	lung
35	chr8:86374000-86374400	Enhancers	Fetal Intestine Small	intestine
36	chr8:86374000-86374600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr8:86374000-86374600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
38	chr8:86374000-86374600	Flanking Active TSS	Liver	Liver
39	chr8:86374000-86375000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr8:86374000-86375000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr8:86374000-86375200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr8:86374000-86375200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:86374000-86375200	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr8:86374000-86375200	Enhancers	Brain Substantia Nigra	brain
45	chr8:86374000-86375200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr8:86374000-86375400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr8:86374000-86375400	Enhancers	Adipose Nuclei	Adipose
48	chr8:86374000-86375400	Enhancers	Brain Cingulate Gyrus	brain
49	chr8:86374000-86375600	Enhancers	Stomach Mucosa	stomach
50	chr8:86374200-86374400	Enhancers	Rectal Mucosa Donor 31	rectum

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