Variant report

Variant	rs541934140
Chromosome Location	chr8:105479252-105479253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	esv3328158	chr8:105477801-105480349	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105477600-105479400	Active TSS	Liver	Liver
2	chr8:105478400-105479400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr8:105478400-105479600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr8:105478400-105479600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr8:105478400-105479600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr8:105478400-105479600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:105478600-105479400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr8:105478600-105479400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr8:105478600-105479400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:105478600-105479400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
11	chr8:105478600-105479400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:105478600-105479400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:105478600-105479400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:105478600-105479400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
15	chr8:105478600-105479400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr8:105478600-105479400	Bivalent/Poised TSS	Fetal Brain Female	brain
17	chr8:105478600-105479400	Active TSS	Ovary	ovary
18	chr8:105478600-105479400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
19	chr8:105478600-105479400	Bivalent/Poised TSS	Thymus	Thymus
20	chr8:105478600-105479400	Bivalent/Poised TSS	HepG2	liver
21	chr8:105478600-105479600	Active TSS	H9 Cell Line	embryonic stem cell
22	chr8:105478600-105479600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:105478600-105479600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
24	chr8:105478600-105479600	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr8:105478800-105479400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:105478800-105479400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:105478800-105479400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:105478800-105479400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:105478800-105479400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:105478800-105479400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:105478800-105479400	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr8:105478800-105479400	Active TSS	Aorta	Aorta
33	chr8:105478800-105479400	Flanking Active TSS	Colonic Mucosa	Colon
34	chr8:105478800-105479400	Active TSS	Colon Smooth Muscle	Colon
35	chr8:105478800-105479400	Flanking Active TSS	Pancreas	Pancrea
36	chr8:105478800-105479400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
37	chr8:105478800-105479600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
38	chr8:105478800-105479600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
39	chr8:105478800-105479600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:105479000-105479400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
41	chr8:105479000-105479400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
42	chr8:105479000-105479400	Bivalent Enhancer	Fetal Stomach	stomach
43	chr8:105479000-105479400	Bivalent/Poised TSS	HSMM	muscle
44	chr8:105479000-105479600	Active TSS	Rectal Smooth Muscle	rectum
45	chr8:105479200-105479400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:105479200-105479400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
47	chr8:105479200-105479400	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
48	chr8:105479200-105479400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr8:105479200-105479400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
50	chr8:105479200-105479400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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