Variant report

Variant	rs541937482
Chromosome Location	chr11:73308221-73308222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73307696..73311155-chr11:73356118..73358808,4	MCF-7	breast:
2	chr11:73289699..73292318-chr11:73308150..73310462,2	K562	blood:

Variant related genes	Relation type
ENSG00000021300	Chromatin interaction
ENSG00000231726	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv20896	chr11:73306779-73309297	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3384593	chr11:73307854-73310302	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv555412	chr11:73307936-73308644	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73306600-73308400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:73306800-73308400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr11:73307000-73308400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:73307000-73308400	Enhancers	Small Intestine	intestine
5	chr11:73307200-73308600	Flanking Active TSS	Dnd41	blood
6	chr11:73307400-73308400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:73307400-73308400	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr11:73307400-73308400	Flanking Active TSS	HepG2	liver
9	chr11:73307400-73310200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:73307600-73308400	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:73307600-73308400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr11:73307600-73308400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr11:73307600-73308400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:73307600-73308400	Enhancers	Primary B cells from peripheral blood	blood
15	chr11:73307600-73308400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr11:73307600-73308400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:73307600-73308400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr11:73307600-73308400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr11:73307600-73308400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr11:73307600-73308400	Enhancers	Esophagus	oesophagus
21	chr11:73307600-73308400	Flanking Active TSS	Fetal Brain Male	brain
22	chr11:73307600-73308400	Enhancers	Placenta	Placenta
23	chr11:73307600-73308400	Enhancers	Ovary	ovary
24	chr11:73307600-73308400	Flanking Active TSS	Psoas Muscle	Psoas
25	chr11:73307600-73308400	Flanking Active TSS	NHLF	lung
26	chr11:73307600-73308600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:73307600-73308600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:73307600-73308600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:73307600-73308600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr11:73307600-73308600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:73307600-73308600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:73307600-73308600	Flanking Active TSS	Brain Cingulate Gyrus	brain
33	chr11:73307600-73308600	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr11:73307600-73308600	Flanking Active TSS	Fetal Lung	lung
35	chr11:73307600-73308600	Flanking Active TSS	Thymus	Thymus
36	chr11:73307600-73308800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:73307800-73308400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr11:73307800-73308400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr11:73307800-73308400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:73307800-73308400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:73307800-73308400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:73307800-73308400	Enhancers	Aorta	Aorta
43	chr11:73307800-73308400	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr11:73307800-73308400	Enhancers	Spleen	Spleen
45	chr11:73307800-73308400	Flanking Active TSS	GM12878-XiMat	blood
46	chr11:73307800-73308400	Flanking Active TSS	NHDF-Ad	bronchial
47	chr11:73307800-73308600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
48	chr11:73307800-73308600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:73307800-73308600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:73307800-73308600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

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