Variant report

Variant	rs541981998
Chromosome Location	chr1:227974819-227974820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:227966135..227968360-chr1:227973552..227975937,2	MCF-7	breast:
2	chr1:227973990..227976500-chr1:228134426..228136462,3	MCF-7	breast:
3	chr1:227973508..227976414-chr1:228271906..228274660,2	K562	blood:
4	chr1:227945394..227947244-chr1:227973849..227976801,2	MCF-7	breast:
5	chr1:227962656..227964965-chr1:227972636..227975785,3	MCF-7	breast:
6	chr1:227970937..227973164-chr1:227974338..227975949,2	K562	blood:
7	chr1:227960240..227967392-chr1:227972741..227977657,8	K562	blood:
8	chr1:227921116..227924283-chr1:227974450..227977412,3	MCF-7	breast:
9	chr1:227973847..227976813-chr1:228134403..228136465,4	MCF-7	breast:
10	chr1:227974795..227976825-chr1:227979678..227981441,2	MCF-7	breast:
11	chr1:227970651..227973164-chr1:227973342..227975838,2	K562	blood:
12	chr1:227968386..227970140-chr1:227972618..227974826,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000081692	Chromatin interaction
ENSG00000143816	Chromatin interaction
ENSG00000143740	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv1007479	chr1:227695868-227984466	Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1010605	chr1:227770415-228332690	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	esv32853	chr1:227880116-228806209	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
5	nsv427952	chr1:227881664-228308629	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv826908	chr1:227895386-228691100	Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
7	nsv873249	chr1:227920061-228121548	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv468238	chr1:227935762-228045748	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv549272	chr1:227935762-228045748	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1005852	chr1:227957099-228148363	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
11	nsv535319	chr1:227957099-228148363	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
12	esv3441420	chr1:227974754-227977302	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227955800-227975200	Weak transcription	Hela-S3	cervix
2	chr1:227958000-227975200	Weak transcription	A549	lung
3	chr1:227964400-227975000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:227970400-227975000	Weak transcription	Aorta	Aorta
5	chr1:227970600-227975400	Weak transcription	K562	blood
6	chr1:227973200-227975000	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:227973400-227975000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:227973400-227975000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr1:227973400-227975000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:227973400-227975200	Bivalent Enhancer	Fetal Thymus	thymus
11	chr1:227973600-227975000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr1:227973600-227975000	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr1:227973600-227975800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr1:227973600-227975800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr1:227974000-227975000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr1:227974000-227975000	Enhancers	Brain Substantia Nigra	brain
17	chr1:227974000-227975000	Enhancers	Esophagus	oesophagus
18	chr1:227974000-227975000	Bivalent Enhancer	Fetal Brain Male	brain
19	chr1:227974000-227975000	Bivalent Enhancer	Placenta	Placenta
20	chr1:227974000-227975000	Enhancers	Lung	lung
21	chr1:227974000-227975200	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr1:227974000-227975200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr1:227974000-227975400	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr1:227974200-227975200	Enhancers	Small Intestine	intestine
25	chr1:227974400-227975000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
26	chr1:227974400-227975200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:227974400-227975200	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr1:227974400-227975200	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr1:227974400-227975200	Flanking Active TSS	Pancreas	Pancrea
30	chr1:227974400-227975600	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr1:227974400-227975600	Flanking Bivalent TSS/Enh	HepG2	liver
32	chr1:227974600-227975000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:227974600-227975000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:227974600-227975000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:227974600-227975000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:227974600-227975000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:227974600-227975000	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:227974600-227975000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
39	chr1:227974600-227975000	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr1:227974600-227975000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:227974600-227975000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
42	chr1:227974600-227975000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
43	chr1:227974600-227975000	Enhancers	Stomach Mucosa	stomach
44	chr1:227974600-227975200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr1:227974600-227975200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
46	chr1:227974600-227975200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr1:227974600-227975200	Flanking Active TSS	Gastric	stomach
48	chr1:227974600-227975200	Flanking Active TSS	Ovary	ovary
49	chr1:227974600-227975400	Flanking Active TSS	Brain Cingulate Gyrus	brain
50	chr1:227974600-227975600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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