Variant report

Variant	rs542023700
Chromosome Location	chr9:6506261-6506262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv1032350	chr9:6328167-6630686	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv892161	chr9:6364449-6523056	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv831497	chr9:6377501-6612402	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv1029766	chr9:6437020-6523605	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
12	nsv831498	chr9:6496021-6689728	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
13	esv2761298	chr9:6505897-6544766	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6463600-6518400	Weak transcription	Fetal Brain Male	brain
2	chr9:6472200-6508200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:6475400-6508200	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:6475400-6508400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:6475400-6508800	Strong transcription	Primary B cells from peripheral blood	blood
6	chr9:6475400-6508800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr9:6475800-6509000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:6475800-6510800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:6476000-6509400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:6477600-6507800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:6477800-6511000	Weak transcription	Fetal Heart	heart
12	chr9:6480200-6508400	Weak transcription	Stomach Mucosa	stomach
13	chr9:6487600-6510600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:6492800-6508800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:6493000-6509000	Strong transcription	Adipose Nuclei	Adipose
16	chr9:6493400-6508400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:6493600-6507400	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:6493800-6508200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:6494000-6508800	Strong transcription	GM12878-XiMat	blood
20	chr9:6495000-6506400	Strong transcription	HepG2	liver
21	chr9:6495000-6508400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr9:6495200-6510800	Strong transcription	Fetal Thymus	thymus
23	chr9:6495400-6510200	Strong transcription	HUVEC	blood vessel
24	chr9:6495400-6510600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:6495400-6511400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:6496400-6508200	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:6496800-6508400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:6498800-6507800	Weak transcription	Psoas Muscle	Psoas
29	chr9:6498800-6554400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:6499000-6506600	Weak transcription	K562	blood
31	chr9:6499000-6511400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:6499000-6528400	Weak transcription	Pancreas	Pancrea
33	chr9:6499200-6506600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:6499600-6507200	Strong transcription	HSMM	muscle
35	chr9:6500200-6506600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr9:6500800-6510200	Weak transcription	Colonic Mucosa	Colon
37	chr9:6500800-6517400	Weak transcription	Esophagus	oesophagus
38	chr9:6501800-6510400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:6502200-6508200	Strong transcription	Fetal Stomach	stomach
40	chr9:6502200-6513600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:6502600-6512200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr9:6502600-6512400	Weak transcription	Aorta	Aorta
43	chr9:6503000-6509800	Strong transcription	A549	lung
44	chr9:6503800-6509000	Strong transcription	Liver	Liver
45	chr9:6504200-6507200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:6504200-6508600	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr9:6504200-6508800	Strong transcription	Dnd41	blood
48	chr9:6504400-6506400	Strong transcription	Osteobl	bone
49	chr9:6504400-6506600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr9:6504400-6507000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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