Variant report

Variant	rs542027740
Chromosome Location	chr5:113714923-113714924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3429063	chr5:113714478-113716651	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3420716	chr5:113714803-113716251	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr5:113713000-113715000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
4	chr5:113714200-113715000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:113714200-113715000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:113714200-113715000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:113714200-113715000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:113714400-113715000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:113714400-113715000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:113714400-113715000	Enhancers	Liver	Liver
11	chr5:113714600-113715000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:113714600-113716200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:113714600-113718200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:113714800-113715000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:113714800-113715000	Enhancers	Left Ventricle	heart
16	chr5:113714800-113715000	Enhancers	Pancreas	Pancrea
17	chr5:113714800-113715800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr5:113714800-113720800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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