The 2.0 version of rSNPBase

Variant report

Variant rs542033653
Chromosome Location chr15:92675652-92675653
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:92643800-92676000 Strong transcription Primary monocytes fromperipheralblood blood
2 chr15:92645000-92679800 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr15:92645200-92705600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr15:92648200-92692600 Weak transcription NHLF lung
5 chr15:92649200-92710800 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr15:92657000-92690200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr15:92660600-92678600 Weak transcription Thymus Thymus
8 chr15:92661000-92703600 Weak transcription Small Intestine intestine
9 chr15:92663000-92677200 Strong transcription Primary T regulatory cells fromperipheralblood blood
10 chr15:92663400-92677600 Strong transcription Primary neutrophils fromperipheralblood blood
11 chr15:92663400-92679200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
12 chr15:92663400-92679400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
13 chr15:92663600-92676200 Strong transcription Primary T helper cells fromperipheralblood blood
14 chr15:92664000-92707000 Weak transcription Liver Liver
15 chr15:92664000-92712000 Weak transcription Psoas Muscle Psoas
16 chr15:92665200-92689000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr15:92665800-92676600 Weak transcription Rectal Smooth Muscle rectum
18 chr15:92665800-92682400 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr15:92665800-92686000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr15:92666000-92685600 Weak transcription Fetal Muscle Leg muscle
21 chr15:92666000-92704200 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr15:92667200-92679200 Strong transcription Lung lung
23 chr15:92668200-92678400 Weak transcription Fetal Heart heart
24 chr15:92668200-92690200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr15:92668600-92690800 Weak transcription Brain Angular Gyrus brain
26 chr15:92669000-92676200 Strong transcription Ovary ovary
27 chr15:92669200-92677200 Weak transcription Fetal Thymus thymus
28 chr15:92669200-92677400 Strong transcription Adipose Nuclei Adipose
29 chr15:92669600-92703000 Weak transcription Brain Anterior Caudate brain
30 chr15:92670400-92677400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr15:92670600-92676000 Weak transcription Duodenum Mucosa Duodenum
32 chr15:92671200-92678400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr15:92671600-92708000 Weak transcription Gastric stomach
34 chr15:92671800-92707800 Weak transcription Colonic Mucosa Colon
35 chr15:92671800-92709200 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr15:92672000-92704200 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr15:92672200-92685400 Weak transcription Brain Hippocampus Middle brain
38 chr15:92672200-92695600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr15:92672200-92703200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr15:92672400-92689600 Weak transcription Fetal Stomach stomach
41 chr15:92672600-92677200 Weak transcription Brain Substantia Nigra brain
42 chr15:92672600-92678200 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr15:92672600-92690200 Weak transcription Spleen Spleen
44 chr15:92672600-92691200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr15:92672800-92678400 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr15:92672800-92687000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr15:92672800-92687200 Weak transcription Primary hematopoietic stem cells blood
48 chr15:92673400-92692600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr15:92673800-92678200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
50 chr15:92673800-92678400 Weak transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015