Variant report

Variant	rs542059560
Chromosome Location	chr2:183458729-183458730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757842	chr2:183437700-183835084	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	esv2759104	chr2:183437700-183835084	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv875479	chr2:183442443-183482466	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv875480	chr2:183442443-183489249	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1837855	chr2:183452578-183499313	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv962053	chr2:183457346-183467152	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183456000-183459600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr2:183456000-183461200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:183456200-183459600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:183456400-183459800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:183456600-183459200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:183456600-183459200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:183457200-183459800	Enhancers	NHLF	lung
8	chr2:183457200-183461000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:183457400-183461000	Enhancers	NHDF-Ad	bronchial
10	chr2:183457400-183461200	Enhancers	Osteobl	bone
11	chr2:183457400-183463000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:183457600-183459200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:183457600-183459200	Enhancers	NH-A	brain
14	chr2:183457600-183459600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:183457600-183459600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:183457600-183459600	Enhancers	HMEC	breast
17	chr2:183457600-183459800	Enhancers	NHEK	skin
18	chr2:183457600-183460400	Enhancers	HSMM	muscle
19	chr2:183457600-183461200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:183457800-183458800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:183457800-183459200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:183457800-183459600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:183457800-183460000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:183458200-183459000	Weak transcription	HSMMtube	muscle
25	chr2:183458200-183459200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr2:183458200-183460600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr2:183458400-183459000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:183458400-183459200	Enhancers	Fetal Stomach	stomach
29	chr2:183458400-183459600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:183458600-183459000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:183458600-183459400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr2:183458600-183460400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr2:183458600-183460800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:183458600-183460800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr2:183458600-183460800	Enhancers	Muscle Satellite Cultured Cells	--
36	chr2:183458600-183470200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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