Variant report

Variant rs542062345
Chromosome Location chr22:23412868-23412869
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:23411600-23413200 Enhancers Fetal Heart heart
2 chr22:23411600-23413600 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
3 chr22:23411600-23413600 Active TSS Colon Smooth Muscle Colon
4 chr22:23411600-23413800 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
5 chr22:23411800-23413000 Bivalent/Poised TSS Rectal Mucosa Donor 31 rectum
6 chr22:23411800-23413000 Bivalent/Poised TSS NHEK skin
7 chr22:23411800-23413200 Active TSS Primary T helper naive cells from peripheral blood blood
8 chr22:23411800-23413200 Active TSS Aorta Aorta
9 chr22:23411800-23413400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr22:23411800-23413400 Active TSS Esophagus oesophagus
11 chr22:23411800-23413400 Transcr. at gene 5' and 3' Right Atrium heart
12 chr22:23411800-23413600 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr22:23411800-23413600 Bivalent/Poised TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr22:23411800-23413600 Active TSS Brain Substantia Nigra brain
15 chr22:23411800-23413600 Active TSS Duodenum Smooth Muscle Duodenum
16 chr22:23411800-23413600 Active TSS Hela-S3 cervix
17 chr22:23411800-23413600 Active TSS NH-A brain
18 chr22:23411800-23414000 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
19 chr22:23411800-23414200 Active TSS Pancreatic Islets Pancreatic Islet
20 chr22:23412000-23413000 Active TSS ES-UCSF4 Cell Line embryonic stem cell
21 chr22:23412000-23413000 Active TSS Sigmoid Colon Sigmoid Colon
22 chr22:23412000-23413000 Active TSS Spleen Spleen
23 chr22:23412000-23413200 Active TSS Primary T helper memory cells from peripheral blood 2 blood
24 chr22:23412000-23413200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
25 chr22:23412000-23413400 Bivalent/Poised TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr22:23412000-23413600 Bivalent/Poised TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr22:23412000-23413600 Active TSS Brain Cingulate Gyrus brain
28 chr22:23412000-23413600 Active TSS Gastric stomach
29 chr22:23412000-23413600 Active TSS A549 lung
30 chr22:23412000-23413800 Active TSS Brain Anterior Caudate brain
31 chr22:23412000-23414200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
32 chr22:23412200-23413000 Bivalent/Poised TSS IMR90 fetal lung fibroblasts Cell Line lung
33 chr22:23412200-23413000 Active TSS Primary T cells fromperipheralblood blood
34 chr22:23412200-23413000 Active TSS Primary T helper naive cells fromperipheralblood blood
35 chr22:23412200-23413000 Active TSS Primary T killer naive cells fromperipheralblood blood
36 chr22:23412200-23413000 Active TSS Primary T killer memory cells from peripheral blood blood
37 chr22:23412200-23413000 Active TSS Muscle Satellite Cultured Cells --
38 chr22:23412200-23413000 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr22:23412200-23413000 Active TSS Brain Hippocampus Middle brain
40 chr22:23412200-23413000 Active TSS Rectal Mucosa Donor 29 rectum
41 chr22:23412200-23413000 Active TSS NHLF lung
42 chr22:23412200-23413200 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr22:23412200-23413200 Active TSS iPS-18 Cell Line embryonic stem cell
44 chr22:23412200-23413200 Active TSS Primary B cells from peripheral blood blood
45 chr22:23412200-23413200 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr22:23412200-23413200 Active TSS Cortex derived primary cultured neurospheres brain
47 chr22:23412200-23413200 Weak transcription Fetal Brain Male brain
48 chr22:23412200-23413200 Bivalent/Poised TSS Fetal Intestine Large intestine
49 chr22:23412200-23413200 Bivalent/Poised TSS Fetal Intestine Small intestine
50 chr22:23412200-23413200 Active TSS Skeletal Muscle Female skeletal muscle

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