Variant report

Variant	rs542109754
Chromosome Location	chr12:11918070-11918071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870039	chr12:11800363-11996598	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv1053609	chr12:11898099-11933906	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv469113	chr12:11913360-11931259	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv557574	chr12:11913360-11931259	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv469114	chr12:11916908-11929481	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv557575	chr12:11916908-11929481	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11905800-11918400	Weak transcription	Fetal Brain Male	brain
2	chr12:11906400-11918600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:11907600-11918200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:11908000-11918800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:11908200-11918800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:11908600-11931800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr12:11909200-11919400	Weak transcription	Liver	Liver
8	chr12:11909600-11932400	Genic enhancers	Fetal Thymus	thymus
9	chr12:11909800-11919000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:11912000-11918600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:11912400-11918800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:11912400-11918800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:11912400-11918800	Weak transcription	Ovary	ovary
14	chr12:11913400-11919000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:11914200-11919000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr12:11914200-11919800	Enhancers	Brain Anterior Caudate	brain
17	chr12:11914400-11918600	Enhancers	Stomach Smooth Muscle	stomach
18	chr12:11914400-11918800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr12:11914400-11918800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr12:11914400-11918800	Enhancers	Rectal Smooth Muscle	rectum
21	chr12:11914400-11919200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr12:11914400-11921600	Enhancers	Primary B cells from peripheral blood	blood
23	chr12:11914400-11925400	Genic enhancers	Dnd41	blood
24	chr12:11914400-11925800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr12:11914600-11918800	Enhancers	Small Intestine	intestine
26	chr12:11914600-11920400	Enhancers	Fetal Stomach	stomach
27	chr12:11914800-11918600	Enhancers	Primary B cells from cord blood	blood
28	chr12:11914800-11918800	Enhancers	Colon Smooth Muscle	Colon
29	chr12:11914800-11918800	Enhancers	Duodenum Mucosa	Duodenum
30	chr12:11914800-11923600	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr12:11915000-11919800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr12:11915000-11919800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr12:11915000-11919800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr12:11915000-11919800	Enhancers	Left Ventricle	heart
35	chr12:11915000-11920000	Enhancers	Stomach Mucosa	stomach
36	chr12:11915200-11920000	Enhancers	Osteobl	bone
37	chr12:11915400-11918400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr12:11915400-11918800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr12:11915400-11918800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr12:11915400-11920000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr12:11915400-11920800	Weak transcription	Gastric	stomach
42	chr12:11915400-11938000	Weak transcription	NHEK	skin
43	chr12:11915600-11918200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr12:11915600-11918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr12:11915600-11920000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr12:11915600-11921800	Enhancers	Fetal Muscle Leg	muscle
47	chr12:11915600-11938000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr12:11915800-11918200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr12:11916000-11918200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr12:11916000-11918200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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