Variant report

Variant	rs542125273
Chromosome Location	chr6:11686990-11686991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11675436..11677701-chr6:11686415..11688887,2	MCF-7	breast:
2	chr6:11685508..11687716-chr6:11690185..11693002,2	MCF-7	breast:
3	chr6:11685812..11688101-chr6:11689840..11692824,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11681600-11687600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11684200-11688200	Enhancers	Fetal Intestine Small	intestine
3	chr6:11684800-11688600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr6:11685000-11687000	Enhancers	Placenta	Placenta
5	chr6:11685000-11688600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:11685000-11689400	Enhancers	Fetal Intestine Large	intestine
7	chr6:11685200-11688400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:11685200-11693000	Weak transcription	Spleen	Spleen
9	chr6:11685400-11688800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:11685800-11687000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:11685800-11687600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:11686000-11687200	Weak transcription	Fetal Heart	heart
13	chr6:11686200-11687000	Enhancers	NHEK	skin
14	chr6:11686200-11687200	Enhancers	HMEC	breast
15	chr6:11686200-11687400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:11686400-11687400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:11686600-11687000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:11686600-11687000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:11686600-11687000	Enhancers	A549	lung
20	chr6:11686600-11687200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:11686600-11687400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:11686600-11687600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:11686600-11687800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:11686600-11687800	Weak transcription	Ovary	ovary
25	chr6:11686600-11689000	Weak transcription	HSMM	muscle
26	chr6:11686600-11701400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:11686600-11702400	Weak transcription	HSMMtube	muscle

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