Variant report

Variant	rs542141825
Chromosome Location	chr13:61553799-61553800
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv511514	chr13:61551100-61556688	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv900242	chr13:61551100-61600601	Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv512321	chr13:61552749-61554301	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2233452	chr13:61552855-61554059	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3511519	chr13:61552897-61553974	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3511541	chr13:61552953-61553940	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3511530	chr13:61552955-61553936	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3511552	chr13:61552969-61553896	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3393493	chr13:61552995-61553885	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3511508	chr13:61553020-61553870	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3511563	chr13:61553034-61553869	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv15564	chr13:61553073-61554006	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61552800-61564000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links