Variant report

Variant	rs542155083
Chromosome Location	chr1:166572732-166572733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:37)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:37 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr1:166572340-166572891	MCF-7	breast:	n/a	chr1:166572492-166572508 chr1:166572554-166572567
2	GATA3	chr1:166572220-166573146	MCF-7	breast:	n/a	chr1:166572492-166572508 chr1:166572554-166572567
3	HDAC2	chr1:166572357-166572896	MCF-7	breast:	n/a	chr1:166572395-166572404
4	FOS	chr1:166572573-166572930	MCF10A-Er-Src	breast:	n/a	n/a
5	TCF7L2	chr1:166572373-166572803	MCF-7	breast:	n/a	n/a
6	EP300	chr1:166572432-166572956	MCF-7	breast:	n/a	n/a
7	FOS	chr1:166572542-166572950	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr1:166572414-166572955	MCF10A-Er-Src	breast:	n/a	n/a
9	STAT3	chr1:166572517-166572925	MCF10A-Er-Src	breast:	n/a	n/a
10	NR2F2	chr1:166572252-166572952	MCF-7	breast:	n/a	n/a
11	EGR1	chr1:166572440-166572910	MCF-7	breast:	n/a	n/a
12	MYC	chr1:166572489-166572882	MCF10A-Er-Src	breast:	n/a	n/a
13	ELF1	chr1:166572385-166572898	MCF-7	breast:	n/a	n/a
14	STAT3	chr1:166572591-166572847	MCF10A-Er-Src	breast:	n/a	n/a
15	STAT3	chr1:166572586-166572856	MCF10A-Er-Src	breast:	n/a	n/a
16	FOSL2	chr1:166572419-166572885	MCF-7	breast:	n/a	n/a
17	JUND	chr1:166572494-166572897	MCF-7	breast:	n/a	n/a
18	MAX	chr1:166572461-166572928	MCF-7	breast:	n/a	n/a
19	NR2F2	chr1:166572279-166572919	MCF-7	breast:	n/a	n/a
20	CEBPB	chr1:166572416-166572866	MCF-7	breast:	n/a	chr1:166572450-166572463 chr1:166572452-166572463 chr1:166572452-166572463
21	GATA3	chr1:166572218-166573079	MCF-7	breast:	n/a	chr1:166572492-166572508 chr1:166572554-166572567
22	SIN3AK20	chr1:166572238-166572892	MCF-7	breast:	n/a	n/a
23	SIN3AK20	chr1:166572292-166573142	MCF-7	breast:	n/a	n/a
24	REST	chr1:166572397-166572856	MCF-7	breast:	n/a	n/a
25	FOS	chr1:166572442-166572950	MCF10A-Er-Src	breast:	n/a	n/a
26	REST	chr1:166572568-166572889	MCF-7	breast:	n/a	n/a
27	HDAC2	chr1:166572488-166572888	MCF-7	breast:	n/a	n/a
28	GATA3	chr1:166572380-166572748	MCF-7	breast:	n/a	chr1:166572492-166572508 chr1:166572554-166572567
29	MYC	chr1:166572547-166572745	MCF10A-Er-Src	breast:	n/a	n/a
30	JUND	chr1:166572383-166572896	MCF-7	breast:	n/a	n/a
31	CEBPB	chr1:166572326-166572939	MCF-7	breast:	n/a	chr1:166572450-166572463 chr1:166572452-166572463 chr1:166572452-166572463
32	STAT3	chr1:166572549-166572865	MCF10A-Er-Src	breast:	n/a	n/a
33	E2F4	chr1:166572547-166572893	MCF10A-Er-Src	breast:	n/a	n/a
34	STAT3	chr1:166572596-166572745	MCF10A-Er-Src	breast:	n/a	n/a
35	ZNF217	chr1:166572380-166573223	MCF-7	breast:	n/a	n/a
36	FOSL2	chr1:166572389-166572887	MCF-7	breast:	n/a	n/a
37	EGR1	chr1:166572326-166572860	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:166572716-166572766	T-47D	breast:	n/a
2	chr1:166572716-166572766	PFSK-1	brain:	n/a
3	chr1:166572716-166572766	Hepatocyte	liver:	n/a
4	chr1:166572716-166572766	HepG2	liver:	n/a
5	chr1:166572716-166572766	HEEpiC	esophagus:	n/a
6	chr1:166572716-166572766	NHDF-neo	bronchial:	n/a
7	chr1:166572716-166572766	LNCaP	prostate:	n/a
8	chr1:166572716-166572766	SK-N-MC	brain:	n/a
9	chr1:166572716-166572766	HRCEpiC	kidney:	n/a
10	chr1:166572716-166572766	Jurkat	blood:	n/a
11	chr1:166572716-166572766	ECC-1	luminal epithelium:	n/a
12	chr1:166572716-166572766	HIPEpiC	eye:	n/a
13	chr1:166572716-166572766	SKMC	muscle:	n/a
14	chr1:166572716-166572766	Caco-2	colon:	n/a
15	chr1:166572716-166572766	SAEC	small airway:	n/a
16	chr1:166572716-166572766	BJ	skin:	n/a
17	chr1:166572716-166572766	SK-N-SH	brain:	n/a
18	chr1:166572716-166572766	AG04449	skin:	fetal
19	chr1:166572716-166572766	AG10803	skin:	n/a
20	chr1:166572716-166572766	HL-60	blood:	n/a
21	chr1:166572716-166572766	NH-A	brain:	n/a
22	chr1:166572716-166572766	BE2_C	brain:	n/a
23	chr1:166572716-166572766	NB4	blood:	n/a
24	chr1:166572716-166572766	HAEpiC	amniotic membrane:	n/a
25	chr1:166572716-166572766	HRPEpiC	eye:	n/a
26	chr1:166572716-166572766	U87	brain:	n/a
27	chr1:166572716-166572766	CMK	blood:	n/a
28	chr1:166572716-166572766	AoSMC	blood vessel:	n/a
29	chr1:166572716-166572766	K562	blood:	n/a
30	chr1:166572716-166572766	HMEC	breast:	n/a
31	chr1:166572716-166572766	HPAEpiC	pulmonary alveolar:	n/a
32	chr1:166572716-166572766	GM12892	blood:	n/a
33	chr1:166572716-166572766	GM06990	blood:	n/a
34	chr1:166572716-166572766	AG09319	gingival:	n/a
35	chr1:166572716-166572766	MCF10A-Er-Src	breast:	n/a
36	chr1:166572716-166572766	ProgFib	skin:	n/a
37	chr1:166572716-166572766	RPTEC	kidney:	n/a
38	chr1:166572716-166572766	H1-hESC	embryonic stem cell:	embryo
39	chr1:166572716-166572766	PANC-1	pancreas:	n/a
40	chr1:166572716-166572766	AG09309	skin:	n/a
41	chr1:166572716-166572766	ovcar-3	ovarian:	n/a
42	chr1:166572716-166572766	GM19239	blood:	n/a
43	chr1:166572716-166572766	HEK293	kidney:	embryo
44	chr1:166572716-166572766	GM12878	blood:	n/a
45	chr1:166572716-166572766	NHBE	bronchial:	n/a
46	chr1:166572716-166572766	HCF	heart:	n/a
47	chr1:166572716-166572766	HCPEpiC	choroid plexus:	n/a
48	chr1:166572716-166572766	MCF-7	breast:	n/a
49	chr1:166572716-166572766	HRE	kidney:	n/a
50	chr1:166572716-166572766	AG04450	lung:	fetal

No data

Variant related genes	Relation type
FMO9P	TF binding region
FMO9P	CpG island

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2757759	chr1:166491879-166650985	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758975	chr1:166491879-166650985	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv872511	chr1:166505186-166590046	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv872512	chr1:166532565-166581706	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv872513	chr1:166532565-166590046	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv872514	chr1:166532565-166595209	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv872515	chr1:166532565-166595692	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv872516	chr1:166536198-166590046	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv872517	chr1:166539001-166590046	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv2756869	chr1:166543542-166601778	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv872519	chr1:166545275-166616786	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv872518	chr1:166545275-166623180	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv34401	chr1:166546342-166617601	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv872520	chr1:166546851-166590046	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv872521	chr1:166568908-166593683	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv872522	chr1:166571770-166593683	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166571400-166574400	Weak transcription	K562	blood
2	chr1:166572400-166572800	Enhancers	HMEC	breast

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