Variant report

Variant	rs542156342
Chromosome Location	chr1:112887857-112887858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:112880187..112882790-chr1:112887781..112889675,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv508526	chr1:112839396-112915215	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv872156	chr1:112886545-112927912	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112880000-112889600	Weak transcription	Right Atrium	heart
2	chr1:112886000-112889400	Weak transcription	Fetal Stomach	stomach
3	chr1:112886400-112888200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:112886600-112888000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr1:112886600-112888200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr1:112886600-112888400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr1:112886600-112888400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr1:112886600-112888800	Enhancers	Dnd41	blood
9	chr1:112886800-112889200	Weak transcription	Esophagus	oesophagus
10	chr1:112886800-112901400	Weak transcription	Pancreas	Pancrea
11	chr1:112887000-112888000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr1:112887000-112888200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr1:112887000-112888400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:112887200-112888000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:112887200-112888200	Enhancers	Thymus	Thymus
16	chr1:112887400-112888000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:112887400-112888000	Enhancers	Primary B cells from peripheral blood	blood
18	chr1:112887400-112888000	Enhancers	Primary hematopoietic stem cells	blood
19	chr1:112887400-112888000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:112887400-112888200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr1:112887400-112888400	Enhancers	Fetal Thymus	thymus
22	chr1:112887400-112888600	Enhancers	HMEC	breast
23	chr1:112887600-112888000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:112887600-112888000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:112887600-112888000	Enhancers	Adipose Nuclei	Adipose
26	chr1:112887800-112888000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:112887800-112888200	Enhancers	Primary T cells from cord blood	blood
28	chr1:112887800-112888200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:112887800-112889400	Enhancers	Spleen	Spleen

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