The 2.0 version of rSNPBase

Variant report

Variant rs542179349
Chromosome Location chr4:2899423-2899424
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:2870200-2914000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr4:2871200-2900600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr4:2874200-2900000 Weak transcription Hela-S3 cervix
4 chr4:2876600-2919200 Strong transcription Primary B cells from peripheral blood blood
5 chr4:2877200-2919400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr4:2880600-2915000 Strong transcription Breast Myoepithelial Primary Cells Breast
7 chr4:2883600-2918600 Strong transcription Fetal Stomach stomach
8 chr4:2888600-2899600 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr4:2888600-2899800 Weak transcription Fetal Brain Male brain
10 chr4:2889600-2900200 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr4:2890000-2900400 Weak transcription Psoas Muscle Psoas
12 chr4:2890400-2918000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr4:2893000-2907800 Strong transcription Primary T regulatory cells fromperipheralblood blood
14 chr4:2893000-2919400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr4:2893200-2907600 Strong transcription Primary T cells from cord blood blood
16 chr4:2893200-2907600 Strong transcription Primary T cells fromperipheralblood blood
17 chr4:2893200-2914000 Strong transcription Primary hematopoietic stem cells short term culture blood
18 chr4:2893200-2918800 Strong transcription Primary monocytes fromperipheralblood blood
19 chr4:2893200-2918800 Strong transcription Fetal Muscle Trunk muscle
20 chr4:2893200-2919200 Strong transcription Monocytes-CD14+_RO01746 blood
21 chr4:2893200-2932600 Strong transcription Fetal Thymus thymus
22 chr4:2893400-2915800 Strong transcription Primary neutrophils fromperipheralblood blood
23 chr4:2893400-2918800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr4:2893400-2919000 Strong transcription Fetal Muscle Leg muscle
25 chr4:2893800-2909200 Strong transcription Lung lung
26 chr4:2893800-2918600 Strong transcription Thymus Thymus
27 chr4:2893800-2919000 Strong transcription Duodenum Mucosa Duodenum
28 chr4:2894000-2902600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr4:2894000-2903800 Strong transcription Fetal Intestine Small intestine
30 chr4:2894000-2923000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr4:2894400-2907600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
32 chr4:2894600-2907600 Strong transcription Primary T helper cells fromperipheralblood blood
33 chr4:2894800-2919800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr4:2895000-2903200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr4:2895000-2903200 Strong transcription Rectal Mucosa Donor 31 rectum
36 chr4:2895000-2903200 Strong transcription Osteobl bone
37 chr4:2895000-2907600 Strong transcription Primary T helper cells PMA-I stimulated --
38 chr4:2895000-2917800 Strong transcription Dnd41 blood
39 chr4:2895200-2901600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr4:2895200-2903200 Strong transcription Colonic Mucosa Colon
41 chr4:2895200-2903200 Strong transcription Sigmoid Colon Sigmoid Colon
42 chr4:2895200-2907800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
43 chr4:2895200-2915000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr4:2895200-2919000 Strong transcription Rectal Mucosa Donor 29 rectum
45 chr4:2895400-2902800 Strong transcription Muscle Satellite Cultured Cells --
46 chr4:2895400-2903000 Strong transcription Primary T helper naive cells from peripheral blood blood
47 chr4:2895400-2903200 Strong transcription Primary T killer naive cells fromperipheralblood blood
48 chr4:2895400-2903600 Strong transcription Fetal Intestine Large intestine
49 chr4:2895400-2907800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
50 chr4:2895400-2908200 Strong transcription HepG2 liver

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Last update: Aug 31, 2015