Variant report

Variant	rs542188776
Chromosome Location	chr12:58517149-58517150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:58516937..58519947-chr17:41380326..41383375,3	K562	blood:
2	chr12:58516945..58519917-chr17:41466381..41467898,2	K562	blood:
3	chr12:58516937..58518437-chr17:41400928..41402668,2	MCF-7	breast:
4	chr12:58516917..58519927-chr17:41462306..41466299,7	K562	blood:
5	chr12:58516917..58519917-chr3:73158604..73161610,3	K562	blood:
6	chr11:62607619..62609220-chr12:58516927..58518437,3	MCF-7	breast:
7	chr12:58516925..58518425-chr17:41438461..41440788,2	MCF-7	breast:
8	chr12:58516917..58519927-chr17:41462306..41466156,7	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction
ENSG00000236383	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000223247	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv729	chr12:58490094-58535466	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3332556	chr12:58499734-58525494	Enhancers Active TSS Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
4	esv3367170	chr12:58500734-58523126	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
5	esv2760247	chr12:58516781-58525282	Weak transcription Active TSS Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58517000-58517400	Active TSS	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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