Variant report

Variant	rs542190479
Chromosome Location	chr5:154156441-154156442
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154155236..154157840-chr5:154218414..154220638,2	K562	blood:
2	chr5:154154220..154157426-chr5:154161456..154164339,3	MCF-7	breast:
3	chr5:154132476..154143251-chr5:154145354..154162500,38	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830521	chr5:154147567-154244266	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv965536	chr5:154155200-154163441	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154144600-154157200	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr5:154147400-154161800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:154150200-154159400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:154151200-154156800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:154151200-154162200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:154151200-154162800	Weak transcription	Primary B cells from cord blood	blood
7	chr5:154151400-154157800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:154151400-154158000	Weak transcription	HMEC	breast
9	chr5:154151400-154159400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:154151400-154159600	Weak transcription	Thymus	Thymus
11	chr5:154151400-154161600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:154151600-154158000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:154151600-154158200	Weak transcription	HUVEC	blood vessel
14	chr5:154151600-154161400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:154151600-154161800	Weak transcription	Fetal Lung	lung
16	chr5:154151600-154162200	Weak transcription	Fetal Brain Female	brain
17	chr5:154151600-154163000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:154151600-154163400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr5:154151600-154171200	Weak transcription	Fetal Brain Male	brain
20	chr5:154151800-154158000	Weak transcription	NHLF	lung
21	chr5:154151800-154158000	Weak transcription	Osteobl	bone
22	chr5:154151800-154161800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:154152400-154156800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:154152400-154156800	Genic enhancers	K562	blood
25	chr5:154152600-154156600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr5:154152600-154156800	Enhancers	Fetal Heart	heart
27	chr5:154152600-154156800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr5:154152600-154157000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr5:154152600-154168200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr5:154152600-154168400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr5:154152800-154156600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr5:154152800-154156800	Strong transcription	Dnd41	blood
33	chr5:154152800-154158000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:154153200-154156800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr5:154153200-154158000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr5:154153400-154156600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr5:154153400-154158200	Weak transcription	NH-A	brain
38	chr5:154153600-154156800	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr5:154153600-154157800	Weak transcription	NHEK	skin
40	chr5:154153600-154158000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr5:154153800-154157200	Enhancers	HepG2	liver
42	chr5:154153800-154157400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr5:154154000-154157800	Weak transcription	Liver	Liver
44	chr5:154154000-154159200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr5:154154000-154162000	Weak transcription	Esophagus	oesophagus
46	chr5:154154200-154156600	Weak transcription	Hela-S3	cervix
47	chr5:154154200-154158600	Weak transcription	Stomach Mucosa	stomach
48	chr5:154154200-154159400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr5:154154400-154158800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr5:154154400-154159400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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