Variant report

Variant	rs542194529
Chromosome Location	chr2:74211237-74211238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:74210765-74213232	GM12878	blood:	n/a	n/a
2	POLR2A	chr2:74211225-74213109	NB4	blood:	n/a	n/a
3	TAF1	chr2:74210498-74211836	ECC-1	luminal epithelium:	n/a	n/a
4	FOXM1	chr2:74210662-74211759	MCF-7	breast:	n/a	n/a
5	STAT3	chr2:74210724-74211262	MCF10A-Er-Src	breast:	n/a	chr2:74211142-74211149
6	POLR2A	chr2:74211177-74212821	GM12878	blood:	n/a	n/a
7	POLR2A	chr2:74210578-74212297	GM12892	blood:	n/a	n/a
8	FOS	chr2:74210765-74211293	MCF10A-Er-Src	breast:	n/a	chr2:74211211-74211225
9	PML	chr2:74210348-74212317	GM12878	blood:	n/a	n/a
10	TCF7L2	chr2:74210640-74212797	HCT-116	colon:	n/a	n/a
11	POLR2A	chr2:74210759-74213608	GM19193	blood:	n/a	n/a
12	MYC	chr2:74210632-74211372	MCF10A-Er-Src	breast:	n/a	chr2:74211332-74211342 chr2:74211170-74211180
13	YY1	chr2:74210505-74211372	ECC-1	luminal epithelium:	n/a	chr2:74210633-74210645 chr2:74210634-74210656
14	E2F6	chr2:74211128-74212223	H1-hESC	embryonic stem cell:	n/a	chr2:74212028-74212040 chr2:74212028-74212037
15	EP300	chr2:74210555-74211719	ECC-1	luminal epithelium:	n/a	chr2:74210842-74210858 chr2:74211646-74211659 chr2:74211611-74211620
16	POLR2A	chr2:74210769-74211905	HepG2	liver:	n/a	n/a
17	TCF12	chr2:74210567-74211386	MCF-7	breast:	n/a	chr2:74210980-74210990
18	EGR1	chr2:74210522-74211263	ECC-1	luminal epithelium:	n/a	chr2:74210648-74210663 chr2:74210888-74210895 chr2:74210644-74210659
19	MYBL2	chr2:74210438-74211583	HepG2	liver:	n/a	n/a
20	EP300	chr2:74210516-74212461	ECC-1	luminal epithelium:	n/a	chr2:74212012-74212028 chr2:74211731-74211747 chr2:74210842-74210858 chr2:74211646-74211659 chr2:74211611-74211620
21	MYC	chr2:74211237-74212388	MCF-7	breast:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74212007-74212018 chr2:74212007-74212018
22	SRF	chr2:74210592-74211444	ECC-1	luminal epithelium:	n/a	n/a
23	MAX	chr2:74210469-74212298	MCF-7	breast:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74211170-74211180 chr2:74212007-74212018 chr2:74212007-74212018
24	E2F6	chr2:74210614-74212293	H1-hESC	embryonic stem cell:	n/a	chr2:74212028-74212040 chr2:74212028-74212037
25	MAZ	chr2:74211184-74212266	HepG2	liver:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74212007-74212018 chr2:74212007-74212018
26	PAX5	chr2:74211230-74212201	GM12892	blood:	n/a	chr2:74211656-74211665 chr2:74211433-74211450 chr2:74211431-74211449
27	YY1	chr2:74210504-74211412	ECC-1	luminal epithelium:	n/a	chr2:74210633-74210645 chr2:74210634-74210656
28	RUNX3	chr2:74210799-74212154	GM12878	blood:	n/a	n/a
29	POLR2A	chr2:74208051-74212199	MCF10A-Er-Src	breast:	n/a	n/a
30	MAX	chr2:74211232-74211406	K562	blood:	n/a	chr2:74211332-74211342
31	POLR2A	chr2:74210597-74212385	MCF-7	breast:	n/a	n/a
32	MBD4	chr2:74210485-74211632	HepG2	liver:	n/a	n/a
33	CREB1	chr2:74210740-74211253	ECC-1	luminal epithelium:	n/a	n/a
34	ZNF263	chr2:74210542-74211636	HEK293-T-REx	kidney:	n/a	n/a
35	RAD21	chr2:74210421-74211753	ECC-1	luminal epithelium:	n/a	chr2:74211604-74211618 chr2:74211730-74211743 chr2:74211603-74211622 chr2:74211558-74211572
36	TEAD4	chr2:74210901-74211333	H1-hESC	embryonic stem cell:	n/a	n/a
37	MYC	chr2:74210151-74213343	A549	lung:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74211170-74211180 chr2:74213042-74213061 chr2:74212007-74212018 chr2:74212007-74212018
38	POLR2A	chr2:74210733-74212841	A549	lung:	n/a	n/a
39	FOXM1	chr2:74210473-74211515	MCF-7	breast:	n/a	n/a
40	FOS	chr2:74210840-74211294	MCF10A-Er-Src	breast:	n/a	chr2:74211211-74211225
41	USF1	chr2:74210706-74211376	ECC-1	luminal epithelium:	n/a	n/a
42	POLR2A	chr2:74210667-74212281	HCT-116	colon:	n/a	n/a
43	NFIC	chr2:74210489-74211787	HepG2	liver:	n/a	n/a
44	POLR2A	chr2:74211018-74213746	K562	blood:	n/a	n/a
45	MAX	chr2:74210609-74212184	GM12878	blood:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74211170-74211180 chr2:74212007-74212018 chr2:74212007-74212018
46	TEAD4	chr2:74210688-74211315	MCF-7	breast:	n/a	n/a
47	POLR2A	chr2:74210822-74213106	H1-hESC	embryonic stem cell:	n/a	n/a
48	RAD21	chr2:74210453-74211327	H1-hESC	embryonic stem cell:	n/a	n/a
49	ZBTB33	chr2:74210628-74211268	HCT-116	colon:	n/a	n/a
50	MYC	chr2:74211130-74212440	NB4	blood:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74211170-74211180 chr2:74212007-74212018 chr2:74212007-74212018

No.	Distal block	Cell Line	Cell type
1	chr2:74209551..74211458-chr6:30582757..30584822,2	MCF-7	breast:
2	chr2:74055188..74061210-chr2:74210942..74215230,5	K562	blood:
3	chr2:74194837..74202788-chr2:74203103..74212249,15	K562	blood:
4	chr2:74210880..74212548-chr2:74372314..74375193,2	K562	blood:
5	chr2:74210581..74214263-chr2:74424560..74427104,3	K562	blood:
6	chr2:74210903..74212994-chr2:74431667..74434283,2	MCF-7	breast:
7	chr2:74210880..74213761-chr2:74373693..74375989,3	K562	blood:
8	chr2:74187365..74198553-chr2:74205167..74212961,17	MCF-7	breast:
9	chr11:133905199..133907855-chr2:74210970..74213610,2	MCF-7	breast:
10	chr2:74211217..74213609-chr2:74345958..74348496,2	MCF-7	breast:
11	chr2:74052797..74060455-chr2:74207744..74214705,21	MCF-7	breast:
12	chr2:74151695..74161558-chr2:74205273..74215127,19	K562	blood:
13	chr2:74209447..74211523-chr2:74377686..74379947,2	MCF-7	breast:
14	chr2:74210159..74214364-chr2:74424247..74427320,6	MCF-7	breast:
15	chr2:74209442..74213118-chr2:74372270..74377274,6	MCF-7	breast:
16	chr2:74006477..74008068-chr2:74209603..74212198,2	MCF-7	breast:
17	chr2:74151187..74158039-chr2:74203173..74216266,29	MCF-7	breast:
18	chr2:74209964..74211607-chr2:74281437..74283507,2	K562	blood:
19	chr2:74210080..74211906-chr2:74412687..74415534,2	MCF-7	breast:
20	chr2:74209535..74211828-chr2:97552282..97555129,2	MCF-7	breast:
21	chr2:74152462..74158334-chr2:74210550..74216243,8	K562	blood:
22	chr2:74210101..74212862-chr2:74733390..74736109,2	K562	blood:
23	chr2:74071679..74074362-chr2:74210863..74213464,2	K562	blood:
24	chr2:74171083..74173536-chr2:74209389..74211761,2	K562	blood:
25	chr2:74055452..74058450-chr2:74210942..74214913,3	K562	blood:
26	chr2:74209118..74215634-chr2:74424964..74427991,9	MCF-7	breast:
27	chr2:74175475..74176994-chr2:74209729..74212006,2	MCF-7	breast:
28	chr12:122235984..122238947-chr2:74211072..74214040,3	MCF-7	breast:
29	chr2:74209066..74214459-chr2:74345671..74349502,5	K562	blood:
30	chr2:74147649..74157677-chr2:74203379..74217813,34	MCF-7	breast:
31	chr2:74209217..74211366-chr2:74294188..74296510,3	MCF-7	breast:
32	chr2:74055755..74057848-chr2:74210321..74213795,3	MCF-7	breast:
33	chr2:74210601..74212361-chr2:74374459..74376721,2	MCF-7	breast:
34	chr2:70312056..70313801-chr2:74209899..74211567,2	MCF-7	breast:
35	chr2:74211059..74212577-chr2:74271171..74274101,2	MCF-7	breast:
36	chr2:74209017..74213063-chr2:74345530..74349441,7	MCF-7	breast:

Variant related genes	Relation type
DGUOK-AS1	TF binding region
ENSG00000235499	TF binding region
ENSG00000255989	TF binding region
ENSG00000222894	Chromatin interaction
ENSG00000204241	Chromatin interaction
ENSG00000212694	Chromatin interaction
ENSG00000114956	Chromatin interaction
ENSG00000124356	Chromatin interaction
ENSG00000225439	Chromatin interaction
ENSG00000179818	Chromatin interaction
ENSG00000257800	Chromatin interaction
ENSG00000144048	Chromatin interaction
ENSG00000254648	Chromatin interaction
ENSG00000163170	Chromatin interaction
ENSG00000115289	Chromatin interaction
ENSG00000065911	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000187605	Chromatin interaction
ENSG00000201876	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011177	chr2:74167343-74239905	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3584956	chr2:74197109-74317135	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv3444943	chr2:74210644-74214042	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv3391332	chr2:74211144-74213742	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74206800-74211400	Flanking Active TSS	NHEK	skin
2	chr2:74209000-74211400	Weak transcription	Ovary	ovary
3	chr2:74209200-74211400	Weak transcription	Aorta	Aorta
4	chr2:74210200-74211600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr2:74210400-74211600	Flanking Active TSS	HMEC	breast
6	chr2:74210400-74211800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr2:74210400-74211800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:74210600-74211400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:74210600-74211400	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr2:74210600-74211400	Flanking Active TSS	GM12878-XiMat	blood
11	chr2:74210600-74211600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:74210600-74211600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:74210600-74211600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr2:74210600-74211600	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr2:74210600-74211600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr2:74210600-74211600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr2:74210600-74211600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:74210600-74211600	Enhancers	Fetal Brain Male	brain
19	chr2:74210600-74211600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
20	chr2:74210600-74211800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr2:74210600-74211800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
22	chr2:74210600-74211800	Flanking Active TSS	Colonic Mucosa	Colon
23	chr2:74210600-74211800	Active TSS	Fetal Kidney	kidney
24	chr2:74210600-74211800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr2:74210600-74212000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:74210600-74213000	Active TSS	H9 Cell Line	embryonic stem cell
27	chr2:74210800-74211400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr2:74210800-74211400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr2:74210800-74211400	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr2:74210800-74211400	Flanking Active TSS	Brain Substantia Nigra	brain
31	chr2:74210800-74211400	Bivalent/Poised TSS	Thymus	Thymus
32	chr2:74210800-74211400	Enhancers	Spleen	Spleen
33	chr2:74210800-74211600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr2:74210800-74211600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr2:74210800-74211600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr2:74210800-74211600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
37	chr2:74210800-74211600	Flanking Active TSS	Placenta	Placenta
38	chr2:74210800-74211600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
39	chr2:74210800-74211600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr2:74210800-74211600	Flanking Active TSS	A549	lung
41	chr2:74210800-74211600	Flanking Active TSS	Hela-S3	cervix
42	chr2:74210800-74211600	Flanking Active TSS	K562	blood
43	chr2:74210800-74211800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr2:74210800-74211800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr2:74210800-74211800	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr2:74210800-74211800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr2:74210800-74211800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr2:74210800-74211800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr2:74210800-74211800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr2:74210800-74211800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland

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