Variant report

Variant	rs542238107
Chromosome Location	chr11:76091435-76091436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:76091064-76091909	MCF-7	breast:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
2	ZNF143	chr11:76091212-76092713	Hela-S3	cervix:	n/a	chr11:76092165-76092180 chr11:76091675-76091685 chr11:76091907-76091925
3	MAZ	chr11:76090859-76093234	IMR90	lung:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
4	POLR2A	chr11:76091168-76092689	Hela-S3	cervix:	n/a	n/a
5	MAZ	chr11:76091271-76092521	K562	blood:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
6	EGR1	chr11:76091259-76091487	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:76091434-76092669	A549	lung:	n/a	n/a
8	POLR2A	chr11:76091322-76092702	GM12892	blood:	n/a	n/a
9	CHD2	chr11:76091154-76092616	Hela-S3	cervix:	n/a	chr11:76092132-76092142
10	POLR2A	chr11:76091303-76092720	K562	blood:	n/a	n/a
11	SIN3AK20	chr11:76091246-76091924	K562	blood:	n/a	n/a
12	CTCF	chr11:76091400-76091550	SK-N-SH_RA	brain:	n/a	n/a
13	E2F6	chr11:76091224-76092688	K562	blood:	n/a	chr11:76091916-76091925 chr11:76092133-76092145 chr11:76092363-76092372 chr11:76092116-76092126 chr11:76091524-76091533 chr11:76092310-76092319 chr11:76092113-76092123 chr11:76091727-76091737
14	RUNX3	chr11:76090991-76091626	GM12878	blood:	n/a	n/a
15	POLR2A	chr11:76091086-76091882	H1-neurons	neurons:	n/a	n/a
16	UBTF	chr11:76091266-76092627	K562	blood:	n/a	n/a
17	RCOR1	chr11:76091152-76091578	K562	blood:	n/a	n/a
18	EGR1	chr11:76091422-76091834	K562	blood:	n/a	chr11:76091609-76091619 chr11:76091611-76091625 chr11:76091614-76091627
19	RUNX3	chr11:76091082-76091648	GM12878	blood:	n/a	n/a
20	POLR2A	chr11:76091417-76092804	H1-hESC	embryonic stem cell:	n/a	n/a
21	MAX	chr11:76091123-76092791	Hela-S3	cervix:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
22	CTCF	chr11:76091320-76091470	GM12874	blood:	n/a	n/a
23	CHD2	chr11:76091425-76092215	K562	blood:	n/a	chr11:76092132-76092142
24	POLR2A	chr11:76091314-76092645	K562	blood:	n/a	n/a
25	ELK1	chr11:76091307-76091478	GM12878	blood:	n/a	n/a
26	HCFC1	chr11:76090021-76093194	Hela-S3	cervix:	n/a	n/a
27	YY1	chr11:76091401-76092495	HepG2	liver:	n/a	chr11:76091759-76091773 chr11:76092112-76092123 chr11:76092217-76092228 chr11:76092115-76092126 chr11:76091764-76091778 chr11:76092291-76092300 chr11:76091720-76091734 chr11:76092115-76092124 chr11:76091736-76091750 chr11:76092112-76092121
28	POLR2A	chr11:76091258-76092644	GM19099	blood:	n/a	n/a
29	ZNF143	chr11:76091246-76092472	GM12878	blood:	n/a	chr11:76092165-76092180 chr11:76091675-76091685 chr11:76091907-76091925
30	RCOR1	chr11:76091267-76091523	Hela-S3	cervix:	n/a	n/a
31	SIN3A	chr11:76091160-76091633	GM12878	blood:	n/a	chr11:76091564-76091577
32	POLR2A	chr11:76091077-76092647	Hela-S3	cervix:	n/a	n/a
33	SIN3A	chr11:76091073-76092795	H1-hESC	embryonic stem cell:	n/a	chr11:76092047-76092060 chr11:76091564-76091577
34	POLR2A	chr11:76091302-76092739	GM18951	blood:	n/a	n/a
35	RFX5	chr11:76090956-76091516	Hela-S3	cervix:	n/a	n/a
36	MAX	chr11:76091206-76091920	ECC-1	luminal epithelium:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
37	ARID3A	chr11:76091313-76091471	K562	blood:	n/a	n/a
38	POLR2A	chr11:76091123-76092703	Hela-S3	cervix:	n/a	n/a
39	SMC3	chr11:76091172-76091560	Hela-S3	cervix:	n/a	n/a
40	YY1	chr11:76091359-76092348	GM12892	blood:	n/a	chr11:76091759-76091773 chr11:76092112-76092123 chr11:76092217-76092228 chr11:76092115-76092126 chr11:76091764-76091778 chr11:76092291-76092300 chr11:76091720-76091734 chr11:76092115-76092124 chr11:76091736-76091750 chr11:76092112-76092121
41	POLR2A	chr11:76091258-76092649	Hela-S3	cervix:	n/a	n/a
42	MAX	chr11:76091142-76091938	K562	blood:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
43	SIN3AK20	chr11:76091105-76091932	PANC-1	pancreas:	n/a	n/a
44	POLR2A	chr11:76091249-76092600	K562	blood:	n/a	n/a
45	SIN3AK20	chr11:76091017-76091598	H1-hESC	embryonic stem cell:	n/a	n/a
46	MYC	chr11:76091086-76092707	MCF10A-Er-Src	breast:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
47	MYC	chr11:76091374-76092445	MCF-7	breast:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
48	MYC	chr11:76091236-76092665	K562	blood:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
49	POLR2A	chr11:76091080-76092652	GM12878	blood:	n/a	n/a
50	MTA3	chr11:76090947-76091683	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:76079303..76082514-chr11:76090617..76092781,5	K562	blood:
2	chr11:76089990..76094695-chr11:76100568..76104844,7	MCF-7	breast:
3	chr1:70686774..70687532-chr11:76091229..76092168,2	HCT-116	colon:
4	chr11:76089758..76095735-chr11:76153234..76157826,15	MCF-7	breast:
5	chr11:76090234..76093573-chr11:76154824..76158196,8	MCF-7	breast:
6	chr11:76090615..76095251-chr11:76152894..76157527,10	K562	blood:
7	chr11:76071533..76073218-chr11:76090981..76092790,2	K562	blood:
8	chr11:76091181..76093702-chr11:76114020..76116665,2	K562	blood:

Variant related genes	Relation type
ENSG00000179240	TF binding region
ENSG00000137492	Chromatin interaction
ENSG00000201756	Chromatin interaction
ENSG00000255135	Chromatin interaction
ENSG00000116754	Chromatin interaction
ENSG00000158636	Chromatin interaction
ENSG00000271757	Chromatin interaction
ENSG00000272301	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440498	chr11:76090729-76093277	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76090200-76091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:76090200-76091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:76090200-76093400	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr11:76090400-76092800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr11:76090400-76093000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:76090600-76091600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr11:76090600-76091600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:76090600-76091600	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr11:76090600-76091600	Active TSS	Right Atrium	heart
10	chr11:76090600-76091800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr11:76090600-76092600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:76090600-76092600	Active TSS	HSMM	muscle
13	chr11:76090600-76093000	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:76090600-76093000	Active TSS	Pancreas	Pancrea
15	chr11:76090600-76093400	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr11:76090600-76093400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:76090600-76093400	Active TSS	Lung	lung
18	chr11:76090800-76091600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr11:76090800-76092400	Active TSS	HMEC	breast
20	chr11:76090800-76092800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:76090800-76092800	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr11:76090800-76092800	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr11:76090800-76092800	Active TSS	NHLF	lung
24	chr11:76090800-76093000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr11:76090800-76093000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:76090800-76093000	Active TSS	Right Ventricle	heart
27	chr11:76090800-76093000	Active TSS	NHDF-Ad	bronchial
28	chr11:76090800-76093200	Active TSS	Fetal Muscle Trunk	muscle
29	chr11:76090800-76093400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:76090800-76093400	Active TSS	A549	lung
31	chr11:76091000-76091600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr11:76091000-76091600	Flanking Active TSS	Primary B cells from peripheral blood	blood
33	chr11:76091000-76091600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr11:76091000-76091600	Bivalent/Poised TSS	HepG2	liver
35	chr11:76091000-76092800	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr11:76091000-76092800	Active TSS	Esophagus	oesophagus
37	chr11:76091000-76092800	Active TSS	Gastric	stomach
38	chr11:76091000-76092800	Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr11:76091000-76093000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr11:76091000-76093000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:76091000-76093000	Active TSS	Aorta	Aorta
42	chr11:76091000-76093200	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr11:76091000-76093400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:76091000-76093400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:76091200-76091600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:76091200-76091600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:76091200-76091600	Active TSS	Fetal Heart	heart
48	chr11:76091200-76092400	Active TSS	Dnd41	blood
49	chr11:76091200-76092400	Active TSS	GM12878-XiMat	blood
50	chr11:76091200-76092600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links