Variant report

Variant	rs542241606
Chromosome Location	chr14:79452765-79452766
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041198	chr14:79452019-79482977	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79451200-79452800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:79451400-79452800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr14:79451600-79453400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:79451600-79453600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:79451800-79453000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:79451800-79453200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:79452400-79452800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
8	chr14:79452400-79452800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
9	chr14:79452400-79452800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
10	chr14:79452400-79452800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
11	chr14:79452400-79453400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:79452600-79452800	Active TSS	NH-A	brain
13	chr14:79452600-79453000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr14:79452600-79453600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:79452600-79454200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr14:79452600-79454800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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