Variant report

Variant	rs542248961
Chromosome Location	chr4:107203686-107203687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879705	chr4:107179126-107212966	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107141600-107214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:107170800-107208200	Weak transcription	Fetal Kidney	kidney
5	chr4:107177400-107207600	Weak transcription	Fetal Brain Female	brain
6	chr4:107177600-107205600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:107177800-107207600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:107177800-107207600	Weak transcription	Adipose Nuclei	Adipose
9	chr4:107177800-107211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:107177800-107215200	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:107178000-107205400	Weak transcription	Thymus	Thymus
12	chr4:107178000-107207800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:107178000-107207800	Weak transcription	Lung	lung
14	chr4:107178000-107207800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:107178000-107208200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:107178000-107208400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr4:107178000-107211800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:107178000-107211800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:107178000-107211800	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:107178000-107211800	Weak transcription	Fetal Stomach	stomach
21	chr4:107178000-107211800	Weak transcription	Left Ventricle	heart
22	chr4:107178000-107211800	Weak transcription	Ovary	ovary
23	chr4:107178000-107236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:107178000-107236200	Weak transcription	Right Ventricle	heart
25	chr4:107178000-107236600	Weak transcription	Esophagus	oesophagus
26	chr4:107178000-107236600	Weak transcription	Pancreas	Pancrea
27	chr4:107178200-107211600	Weak transcription	Placenta	Placenta
28	chr4:107178200-107236000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:107179000-107211400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr4:107179800-107208600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:107180600-107207000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr4:107180600-107207400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:107186000-107211800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr4:107186200-107207600	Weak transcription	Liver	Liver
35	chr4:107186200-107207800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr4:107186200-107212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:107187000-107208200	Weak transcription	Fetal Intestine Large	intestine
38	chr4:107187600-107215200	Weak transcription	Fetal Intestine Small	intestine
39	chr4:107190800-107208600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:107192000-107208600	Weak transcription	HSMMtube	muscle
41	chr4:107192400-107215200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr4:107192600-107208000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:107193000-107204400	Weak transcription	HepG2	liver
44	chr4:107194000-107207600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:107194200-107211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:107194400-107221200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:107194800-107227600	Weak transcription	Brain Angular Gyrus	brain
48	chr4:107195000-107203800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr4:107195000-107207800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:107195000-107208600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links