The 2.0 version of rSNPBase

Variant report

Variant rs542250935
Chromosome Location chr12:106528797-106528798
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:106504800-106529000 Enhancers Left Ventricle heart
2 chr12:106504800-106532400 Weak transcription Spleen Spleen
3 chr12:106509800-106531400 Weak transcription Gastric stomach
4 chr12:106513800-106529000 Enhancers Fetal Heart heart
5 chr12:106518200-106529000 Enhancers Right Ventricle heart
6 chr12:106519800-106529000 Weak transcription Fetal Kidney kidney
7 chr12:106520600-106530200 Enhancers iPS-15b Cell Line embryonic stem cell
8 chr12:106521600-106528800 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr12:106523000-106529000 Weak transcription Brain Germinal Matrix brain
10 chr12:106524000-106529800 Enhancers HUES64 Cell Line embryonic stem cell
11 chr12:106524200-106530200 Enhancers H1 Cell Line embryonic stem cell
12 chr12:106524400-106529000 Flanking Active TSS A549 lung
13 chr12:106524400-106530600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
14 chr12:106524600-106528800 Enhancers Brain Inferior Temporal Lobe brain
15 chr12:106524600-106529600 Enhancers NHLF lung
16 chr12:106524600-106529800 Enhancers ES-I3 Cell Line embryonic stem cell
17 chr12:106524600-106529800 Enhancers Fetal Muscle Leg muscle
18 chr12:106524800-106528800 Enhancers NH-A brain
19 chr12:106525000-106529000 Enhancers Brain Substantia Nigra brain
20 chr12:106525000-106529800 Enhancers Fetal Lung lung
21 chr12:106525200-106529000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr12:106525200-106529800 Enhancers Liver Liver
23 chr12:106525200-106530200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr12:106525400-106529000 Enhancers Brain Anterior Caudate brain
25 chr12:106525400-106529000 Genic enhancers HSMM muscle
26 chr12:106525400-106529400 Enhancers NHDF-Ad bronchial
27 chr12:106525400-106529600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr12:106525600-106528800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
29 chr12:106525600-106529000 Enhancers HUVEC blood vessel
30 chr12:106525600-106529400 Enhancers Muscle Satellite Cultured Cells --
31 chr12:106525600-106529600 Enhancers NHEK skin
32 chr12:106525600-106529800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr12:106525600-106530200 Enhancers ES-WA7 Cell Line embryonic stem cell
34 chr12:106525600-106530200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr12:106525600-106530200 Enhancers H9 Cell Line embryonic stem cell
36 chr12:106525800-106528800 Enhancers Aorta Aorta
37 chr12:106525800-106529000 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr12:106525800-106529800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr12:106525800-106530400 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
40 chr12:106526000-106529000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr12:106526000-106529000 Enhancers Brain Cingulate Gyrus brain
42 chr12:106526200-106529000 Enhancers Psoas Muscle Psoas
43 chr12:106526200-106529600 Enhancers HMEC breast
44 chr12:106526200-106529800 Weak transcription Rectal Smooth Muscle rectum
45 chr12:106526400-106529200 Enhancers Fetal Brain Male brain
46 chr12:106526400-106529200 Enhancers Osteobl bone
47 chr12:106526600-106529600 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr12:106526600-106529800 Enhancers Hela-S3 cervix
49 chr12:106526600-106531200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr12:106526600-106531600 Enhancers Breast Myoepithelial Primary Cells Breast

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015