Variant report

Variant	rs542257625
Chromosome Location	chr4:79083194-79083195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79082865..79083529-chr6:109330266..109331128,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000080546	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv879502	chr4:79052851-79144309	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv829977	chr4:79082318-79110300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79071000-79083600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:79071400-79096600	Weak transcription	Pancreas	Pancrea
3	chr4:79078000-79083800	Weak transcription	Fetal Intestine Large	intestine
4	chr4:79078200-79083600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:79078200-79085000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:79078200-79094200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:79078400-79083400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:79078400-79083600	Weak transcription	HepG2	liver
9	chr4:79078400-79095600	Weak transcription	Psoas Muscle	Psoas
10	chr4:79081600-79083400	Weak transcription	Fetal Kidney	kidney
11	chr4:79081600-79084400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:79081800-79084200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:79082000-79084000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:79082400-79083400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:79082400-79083400	Weak transcription	Fetal Intestine Small	intestine
16	chr4:79082400-79085200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr4:79082400-79086600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:79082600-79084200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:79083000-79084200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr4:79083000-79084400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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