Variant report

Variant	rs542261395
Chromosome Location	chr19:18942063-18942064
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911293	chr19:18872917-19050957	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv911294	chr19:18872917-19093619	Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv833777	chr19:18875936-19031076	Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv911297	chr19:18928480-19077385	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv911298	chr19:18928480-19093619	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv911299	chr19:18939954-18984843	Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv3407673	chr19:18941977-18944525	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	esv3452119	chr19:18942002-18944150	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18941600-18942200	Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr19:18941600-18942200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr19:18941600-18943800	Active TSS	Duodenum Mucosa	Duodenum
4	chr19:18942000-18942200	Enhancers	Primary B cells from peripheral blood	blood
5	chr19:18942000-18942200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr19:18942000-18942200	Enhancers	Primary hematopoietic stem cells	blood
7	chr19:18942000-18942200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr19:18942000-18942200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:18942000-18942200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr19:18942000-18942200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr19:18942000-18942200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr19:18942000-18942200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr19:18942000-18942200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr19:18942000-18942200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr19:18942000-18942200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr19:18942000-18942200	Enhancers	Adipose Nuclei	Adipose
17	chr19:18942000-18942200	Enhancers	Liver	Liver
18	chr19:18942000-18942200	Enhancers	Brain Anterior Caudate	brain
19	chr19:18942000-18942200	Enhancers	Placenta	Placenta
20	chr19:18942000-18942200	Enhancers	Stomach Smooth Muscle	stomach
21	chr19:18942000-18942200	Enhancers	GM12878-XiMat	blood
22	chr19:18942000-18942200	Enhancers	Hela-S3	cervix
23	chr19:18942000-18942200	Enhancers	HMEC	breast

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