Variant report

Variant	rs542271823
Chromosome Location	chr7:69675973-69675974
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv607430	chr7:69658160-69702047	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1030911	chr7:69675761-69721623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69655000-69692400	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69671400-69676600	Weak transcription	Ovary	ovary
3	chr7:69672600-69676000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:69673200-69676200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:69673400-69676200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:69674000-69678400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:69674200-69678800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:69674600-69679800	Enhancers	Fetal Brain Male	brain
9	chr7:69674800-69676000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:69674800-69676000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:69675000-69676400	Enhancers	Fetal Brain Female	brain
12	chr7:69675200-69676000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:69675200-69676000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:69675200-69676000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:69675200-69676200	Enhancers	Fetal Kidney	kidney
16	chr7:69675400-69676200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr7:69675600-69676000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr7:69675600-69676200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr7:69675600-69676200	Enhancers	Psoas Muscle	Psoas
20	chr7:69675800-69676000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:69675800-69676200	Enhancers	Fetal Muscle Leg	muscle
22	chr7:69675800-69679200	Weak transcription	Fetal Lung	lung

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