Variant report

Variant	rs542284822
Chromosome Location	chr5:75678079-75678080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75676963..75680213-chr5:75697591..75700759,3	K562	blood:
2	chr5:75676600..75679486-chr5:75697591..75699159,2	K562	blood:

Variant related genes	Relation type
ENSG00000145703	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75669000-75682400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:75675400-75678400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:75675400-75685800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:75675600-75679000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:75675800-75678800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:75675800-75679000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:75675800-75679000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:75675800-75679000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr5:75675800-75679000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr5:75676000-75679000	Weak transcription	Primary T cells from cord blood	blood
11	chr5:75676200-75679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:75676400-75678200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr5:75676400-75679800	Weak transcription	Fetal Thymus	thymus
14	chr5:75676400-75679800	Weak transcription	Pancreas	Pancrea
15	chr5:75676600-75679800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:75676800-75678200	Enhancers	HepG2	liver
17	chr5:75676800-75678400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:75676800-75679800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:75676800-75680000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:75676800-75680200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:75676800-75681600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:75676800-75681800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr5:75677000-75679800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:75677000-75679800	Weak transcription	Liver	Liver
25	chr5:75677000-75681800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:75677000-75684000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr5:75677000-75684800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:75677000-75684800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr5:75677200-75678200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr5:75677200-75679200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr5:75677200-75680000	Weak transcription	K562	blood
32	chr5:75677200-75682000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr5:75677400-75689000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr5:75677600-75681400	Weak transcription	Placenta	Placenta
35	chr5:75677600-75681600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr5:75677800-75691200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr5:75678000-75679400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr5:75678000-75681600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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