Variant report

Variant	rs542290683
Chromosome Location	chr5:150968851-150968852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:150962459..150965963-chr5:150966583..150970209,3	MCF-7	breast:
2	chr5:150967406..150969567-chr5:150971119..150974088,3	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5068	chr5:150968232-150979554	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150961800-150970400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:150964400-150975000	Weak transcription	HSMMtube	muscle
3	chr5:150966000-150969200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:150966000-150969600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:150966000-150969600	Weak transcription	HSMM	muscle
6	chr5:150966000-151002000	Weak transcription	Right Atrium	heart
7	chr5:150966200-150969800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:150966200-150972400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:150966800-150969200	Transcr. at gene 5' and 3'	NHEK	skin
10	chr5:150967400-150969000	Transcr. at gene 5' and 3'	HMEC	breast
11	chr5:150967800-150969200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:150968000-150969200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:150968000-150970800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:150968200-150969600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:150968600-150970400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr5:150968600-150971200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:150968600-150971200	Active TSS	Esophagus	oesophagus
18	chr5:150968800-150969000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:150968800-150969000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr5:150968800-150969000	Enhancers	Fetal Thymus	thymus
21	chr5:150968800-150969800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:150968800-150970000	Enhancers	Adipose Nuclei	Adipose
23	chr5:150968800-150973800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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