The 2.0 version of rSNPBase

Variant report

Variant rs542340683
Chromosome Location chr15:41862976-41862977
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:41852200-41877400 Weak transcription Aorta Aorta
2 chr15:41852400-41877200 Weak transcription Colon Smooth Muscle Colon
3 chr15:41852600-41877400 Weak transcription HMEC breast
4 chr15:41852800-41877400 Weak transcription NHEK skin
5 chr15:41853200-41863200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr15:41853200-41872600 Weak transcription Hela-S3 cervix
7 chr15:41853400-41870600 Weak transcription Stomach Mucosa stomach
8 chr15:41853800-41864000 Genic enhancers Brain Cingulate Gyrus brain
9 chr15:41854000-41871400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr15:41854200-41877000 Weak transcription Fetal Brain Male brain
11 chr15:41855400-41863400 Weak transcription Muscle Satellite Cultured Cells --
12 chr15:41855400-41864400 Genic enhancers Brain Hippocampus Middle brain
13 chr15:41855400-41877000 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr15:41855400-41877200 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr15:41857400-41864000 Genic enhancers Brain Inferior Temporal Lobe brain
16 chr15:41857600-41863200 Weak transcription Fetal Brain Female brain
17 chr15:41858800-41863200 Genic enhancers Ovary ovary
18 chr15:41859000-41865400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr15:41859000-41866200 Weak transcription NHDF-Ad bronchial
20 chr15:41859000-41869000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr15:41859600-41865800 Strong transcription Stomach Smooth Muscle stomach
22 chr15:41859600-41868000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr15:41860200-41866200 Strong transcription Esophagus oesophagus
24 chr15:41860800-41863000 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
25 chr15:41860800-41871800 Strong transcription Brain Germinal Matrix brain
26 chr15:41861000-41863000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr15:41861000-41863600 Genic enhancers Brain Substantia Nigra brain
28 chr15:41861000-41877200 Weak transcription HUVEC blood vessel
29 chr15:41861200-41863000 Weak transcription Lung lung
30 chr15:41861200-41865200 Weak transcription Gastric stomach
31 chr15:41861200-41867400 Weak transcription Left Ventricle heart
32 chr15:41861200-41870000 Strong transcription Cortex derived primary cultured neurospheres brain
33 chr15:41861200-41870000 Weak transcription HSMMtube muscle
34 chr15:41861200-41871200 Weak transcription Small Intestine intestine
35 chr15:41861200-41877000 Weak transcription Placenta Amnion Placenta Amnion
36 chr15:41861400-41863600 Strong transcription Fetal Lung lung
37 chr15:41861400-41865000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr15:41861400-41865400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr15:41861400-41867400 Weak transcription Right Ventricle heart
40 chr15:41861400-41868000 Strong transcription iPS-15b Cell Line embryonic stem cell
41 chr15:41861400-41870000 Strong transcription Fetal Muscle Leg muscle
42 chr15:41861400-41870400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr15:41861400-41870400 Strong transcription Fetal Stomach stomach
44 chr15:41861400-41870600 Weak transcription ES-WA7 Cell Line embryonic stem cell
45 chr15:41861400-41870600 Strong transcription Fetal Muscle Trunk muscle
46 chr15:41861400-41870800 Strong transcription HUES6 Cell Line embryonic stem cell
47 chr15:41861400-41871000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr15:41861400-41871400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr15:41861400-41871400 Strong transcription HUES48 Cell Line embryonic stem cell
50 chr15:41861400-41873200 Weak transcription K562 blood

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Last update: Aug 31, 2015