Variant report

Variant	rs542371641
Chromosome Location	chr15:41270161-41270162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41269511..41271032-chr15:41281628..41283628,2	K562	blood:
2	chr15:41243576..41247065-chr15:41269319..41273291,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128965	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1794127	chr15:41245289-41276158	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41252800-41270800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:41258800-41270400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:41258800-41270800	Weak transcription	Psoas Muscle	Psoas
4	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:41262000-41271400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:41264000-41275400	Weak transcription	Fetal Brain Male	brain
7	chr15:41264600-41271800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:41265400-41271600	Weak transcription	Stomach Mucosa	stomach
9	chr15:41266000-41274200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:41266200-41275000	Strong transcription	Fetal Muscle Trunk	muscle
11	chr15:41266600-41274000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:41266600-41275000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:41266800-41273800	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr15:41266800-41274000	Strong transcription	Osteobl	bone
15	chr15:41266800-41275200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:41266800-41277400	Strong transcription	Fetal Muscle Leg	muscle
17	chr15:41266800-41278400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:41266800-41280200	Strong transcription	Fetal Brain Female	brain
19	chr15:41266800-41280400	Strong transcription	Brain Substantia Nigra	brain
20	chr15:41266800-41281400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr15:41266800-41283800	Strong transcription	A549	lung
22	chr15:41266800-41290000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:41266800-41298400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:41267000-41280600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:41267000-41280800	Strong transcription	Brain Germinal Matrix	brain
26	chr15:41267200-41270200	Weak transcription	NHDF-Ad	bronchial
27	chr15:41267200-41272600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:41267200-41294800	Strong transcription	Primary T cells from cord blood	blood
29	chr15:41267600-41280600	Strong transcription	Fetal Stomach	stomach
30	chr15:41267600-41294200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:41267600-41301200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:41267800-41273400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:41267800-41273400	Strong transcription	Lung	lung
34	chr15:41267800-41274400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:41267800-41280600	Strong transcription	Fetal Intestine Large	intestine
36	chr15:41267800-41280800	Strong transcription	Ovary	ovary
37	chr15:41267800-41281000	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr15:41267800-41281000	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:41267800-41282000	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:41267800-41284400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:41267800-41284600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr15:41267800-41290200	Strong transcription	NHEK	skin
43	chr15:41267800-41290800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:41267800-41294200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr15:41267800-41301400	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr15:41268000-41271000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:41268000-41274800	Strong transcription	HSMMtube	muscle
48	chr15:41268000-41274800	Strong transcription	NH-A	brain
49	chr15:41268000-41275000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:41268000-41276000	Strong transcription	Thymus	Thymus

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