Variant report

Variant	rs542387050
Chromosome Location	chr5:96496259-96496260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv830412	chr5:96427305-96606619	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv830413	chr5:96450582-96509294	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv882391	chr5:96496189-96533469	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv882392	chr5:96496189-96546238	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv882393	chr5:96496189-96567950	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96478400-96507800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:96492200-96498000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:96492200-96510200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:96493600-96498200	Strong transcription	Primary B cells from cord blood	blood
5	chr5:96493600-96501600	Weak transcription	NHLF	lung
6	chr5:96493800-96497800	Weak transcription	HUVEC	blood vessel
7	chr5:96494000-96496600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:96494000-96496600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:96494000-96496600	Weak transcription	NHDF-Ad	bronchial
10	chr5:96494000-96502800	Weak transcription	Psoas Muscle	Psoas
11	chr5:96494200-96496400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:96494200-96496400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:96494200-96496400	Weak transcription	Fetal Lung	lung
14	chr5:96494200-96496600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:96494200-96497400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:96494200-96497800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:96494200-96498000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr5:96494200-96498000	Weak transcription	Fetal Kidney	kidney
19	chr5:96494200-96499200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:96494200-96499600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:96494200-96501000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr5:96494200-96501400	Weak transcription	Brain Anterior Caudate	brain
23	chr5:96494200-96503000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:96494200-96506600	Weak transcription	Ovary	ovary
25	chr5:96494400-96496600	Weak transcription	K562	blood
26	chr5:96494400-96496800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:96494400-96496800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr5:96494400-96496800	Strong transcription	Skeletal Muscle Male	skeletal muscle
29	chr5:96494400-96497400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:96494400-96497800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:96494400-96498000	Weak transcription	Adipose Nuclei	Adipose
32	chr5:96494400-96499600	Weak transcription	Esophagus	oesophagus
33	chr5:96494400-96501400	Strong transcription	Liver	Liver
34	chr5:96494400-96501800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr5:96494400-96502800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr5:96494400-96503200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:96494400-96505200	Weak transcription	Fetal Brain Male	brain
38	chr5:96494400-96510600	Weak transcription	Gastric	stomach
39	chr5:96494400-96515200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:96494400-96518000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr5:96494600-96496600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr5:96494600-96497000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:96494600-96497000	Strong transcription	Brain Hippocampus Middle	brain
44	chr5:96494600-96497000	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr5:96494600-96497800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr5:96494600-96498800	Weak transcription	Left Ventricle	heart
47	chr5:96494600-96499200	Strong transcription	Fetal Intestine Large	intestine
48	chr5:96494600-96500800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr5:96494600-96500800	Strong transcription	HSMM	muscle
50	chr5:96494600-96501000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links