Variant report

Variant	rs542398466
Chromosome Location	chr13:84660590-84660591
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050457	chr13:84540846-84676790	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562554	chr13:84547284-84662368	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1047488	chr13:84629304-84696148	Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1050242	chr13:84633380-84661162	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv826732	chr13:84656285-84665033	ZNF genes & repeats Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84660200-84661000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr13:84660200-84661800	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr13:84660200-84661800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr13:84660400-84660600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:84660400-84661000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:84660400-84661000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:84660400-84661000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:84660400-84661000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:84660400-84661000	Active TSS	Ovary	ovary
10	chr13:84660400-84661200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:84660400-84661200	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr13:84660400-84661200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:84660400-84661200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
14	chr13:84660400-84661200	Active TSS	Pancreas	Pancrea
15	chr13:84660400-84661200	Active TSS	Right Ventricle	heart
16	chr13:84660400-84661200	Active TSS	Stomach Smooth Muscle	stomach
17	chr13:84660400-84661200	Active TSS	Thymus	Thymus
18	chr13:84660400-84661400	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr13:84660400-84661800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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