The 2.0 version of rSNPBase

Variant report

Variant rs542416005
Chromosome Location chr6:5778028-5778029
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5753000-5786000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr6:5765200-5778800 Weak transcription Muscle Satellite Cultured Cells --
3 chr6:5765400-5782200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr6:5765600-5782800 Weak transcription Gastric stomach
5 chr6:5765600-5783000 Weak transcription Esophagus oesophagus
6 chr6:5766000-5783400 Weak transcription Brain Hippocampus Middle brain
7 chr6:5766000-5783400 Weak transcription Right Atrium heart
8 chr6:5767000-5782200 Weak transcription Fetal Heart heart
9 chr6:5767800-5781600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr6:5768200-5782400 Weak transcription Duodenum Mucosa Duodenum
11 chr6:5769400-5781400 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr6:5770000-5783000 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr6:5770200-5782800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr6:5770200-5783000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr6:5770400-5782400 Weak transcription Right Ventricle heart
16 chr6:5770600-5782200 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr6:5770800-5782000 Weak transcription Fetal Intestine Large intestine
18 chr6:5771000-5779600 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr6:5771400-5781000 Weak transcription Adipose Nuclei Adipose
20 chr6:5771600-5782400 Weak transcription Monocytes-CD14+_RO01746 blood
21 chr6:5771600-5782600 Weak transcription Primary monocytes fromperipheralblood blood
22 chr6:5772000-5782600 Weak transcription Colonic Mucosa Colon
23 chr6:5772200-5783200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr6:5772400-5782800 Weak transcription Stomach Smooth Muscle stomach
25 chr6:5772600-5781800 Weak transcription Left Ventricle heart
26 chr6:5772600-5782800 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr6:5772800-5786800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr6:5773400-5778800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr6:5773400-5782600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr6:5773800-5778400 Weak transcription Primary B cells from cord blood blood
31 chr6:5773800-5783000 Weak transcription Brain Anterior Caudate brain
32 chr6:5774000-5778400 Weak transcription Primary B cells from peripheral blood blood
33 chr6:5774400-5787400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr6:5774800-5778800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr6:5775000-5778200 Weak transcription Primary T cells fromperipheralblood blood
36 chr6:5775600-5783000 Weak transcription Ovary ovary
37 chr6:5776200-5782400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr6:5776200-5783000 Weak transcription Pancreas Pancrea
39 chr6:5776400-5782600 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr6:5776400-5786800 Weak transcription Thymus Thymus
41 chr6:5776600-5782200 Weak transcription Spleen Spleen
42 chr6:5776800-5778800 Weak transcription Primary T cells from cord blood blood
43 chr6:5776800-5779200 Enhancers Primary neutrophils fromperipheralblood blood
44 chr6:5776800-5782400 Weak transcription Fetal Intestine Small intestine
45 chr6:5777000-5782800 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr6:5777200-5782000 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr6:5777400-5778600 Weak transcription Fetal Stomach stomach
48 chr6:5777400-5781200 Weak transcription Fetal Muscle Leg muscle
49 chr6:5777600-5778800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr6:5777600-5778800 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015