Variant report

Variant	rs542451827
Chromosome Location	chr9:16883994-16883995
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	esv3482024	chr9:16882203-16885246	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv3482026	chr9:16882387-16885126	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3482023	chr9:16882424-16885112	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3482025	chr9:16882461-16885079	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv3482028	chr9:16882483-16885075	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3482027	chr9:16882519-16885022	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv15846	chr9:16882532-16884965	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3482030	chr9:16882533-16885018	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv613672	chr9:16882566-16884586	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv613673	chr9:16882566-16884791	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv613674	chr9:16882566-16884874	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
18	nsv613675	chr9:16882566-16884937	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
19	nsv613676	chr9:16882729-16884937	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
20	nsv613677	chr9:16882888-16884791	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
21	nsv613678	chr9:16882888-16884874	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
22	nsv613679	chr9:16882888-16884937	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv613680	chr9:16882888-16887073	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
24	nsv613681	chr9:16883563-16884791	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv613682	chr9:16883737-16884791	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
26	nsv613683	chr9:16883737-16884874	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
27	nsv613684	chr9:16883737-16884937	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16872000-16885000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16883200-16884400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:16883200-16885400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:16883200-16886200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:16883400-16884400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:16883400-16885400	Enhancers	Osteobl	bone
7	chr9:16883400-16886000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:16883600-16885800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:16883600-16886600	Enhancers	Dnd41	blood
10	chr9:16883800-16885400	Enhancers	Fetal Lung	lung
11	chr9:16883800-16885400	Enhancers	Stomach Smooth Muscle	stomach
12	chr9:16883800-16885800	Enhancers	HSMM	muscle
13	chr9:16883800-16885800	Enhancers	NHDF-Ad	bronchial
14	chr9:16883800-16886000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:16883800-16886000	Enhancers	NHLF	lung
16	chr9:16883800-16886200	Enhancers	Primary hematopoietic stem cells	blood
17	chr9:16883800-16886200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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